Gene detail

Detail information of GWHGAAZE002869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010252481.1	0	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Nelumbo nucifera]
COG	YP_004508837.1	5E-49	1,4-alpha-glucan branching enzyme
Swissprot	tr\|D2WL32\|GLGB3_ARATH	0	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|D7T813\|D7T813_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26672.3}
TAIR10	AT3G20440.2	0	Alpha amylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87814803	87822067	+
GWHAAZE00000001	mRNA	87814803	87822067	+
GWHAAZE00000001	exon	87814803	87815074	+
GWHAAZE00000001	exon	87815521	87815592	+
GWHAAZE00000001	exon	87815765	87815829	+
GWHAAZE00000001	exon	87816600	87817307	+
GWHAAZE00000001	exon	87820085	87820257	+
GWHAAZE00000001	exon	87820406	87820495	+
GWHAAZE00000001	exon	87820623	87820698	+
GWHAAZE00000001	exon	87821089	87821196	+
GWHAAZE00000001	exon	87821683	87821713	+
GWHAAZE00000001	exon	87821962	87822067	+
GWHAAZE00000001	CDS	87814803	87815074	+
GWHAAZE00000001	CDS	87815521	87815592	+
GWHAAZE00000001	CDS	87815765	87815829	+
GWHAAZE00000001	CDS	87816600	87817307	+
GWHAAZE00000001	CDS	87820085	87820257	+
GWHAAZE00000001	CDS	87820406	87820495	+
GWHAAZE00000001	CDS	87820623	87820698	+
GWHAAZE00000001	CDS	87821089	87821196	+
GWHAAZE00000001	CDS	87821683	87821713	+
GWHAAZE00000001	CDS	87821962	87822067	+

Transcript Sequence
>GWHTAAZE002873 ATGGCTTCTTCACTCATACTCCCACCTCTAGTTTCAATACCTTCATCCTACTCTTCTCGACCCCACAACAACCCTAACACCACTCACCGGCGACTCCTTTTCCCCTACCGGAGGAACTGGCGTTGTTCAGCCACCGACCAACCGCCACAAAGACAGCGAAAGTCGAAGAACGCGAAAGTAGAGTTAAAGAGAGAAAAAGGAGTTGACCCTGTTGGGTTCCTTCCTAAATTCGACATCTCCCACAAAGCTTTCAATCACTTTCTCCGCGAGAGGTATAAAGCATTAAAGGACTTGAAAGATGAAATTTTGAAGCGCCACATGAATTTGAAGGAGATGGCTTCTGGATACGAAATACTTGGTATGCACCGCAACGTGCAACATCGGGTGGATTACATGGAGTGGGCTCCAGCTCATTTGCCAAATGCACGTATTGAATCAGGTGCTCGCTACTGTGCACTAGTTGGTGATTTCAATGGTTGGTCACCTACAGAAGATGCTGCAAGAGAGGGTCATTTTGGGCATGATGATTATGGATATTGGTTTATCATTCTCGAAGATAAGCTAAGGGAGGGCGAAGAACCTGATGAAGTATACTTTCAGCAGTACAACTATGTGGATGATTATGATAAAGGCGACAGTGGAGTTAGTGTTATGGAAGTTTTTAATAAAGCAAATGATGAGTATTGGGAACCTGGGGAAGACCACTTTATAAAAAATCGATATGAAGGTGTAGCTAAGTTGTACGAAGAAATATTTGGGCCAAACGGGCCTCAAACAGAAGATGAATTGGAAGATATACCGGATGCAGAGACGAGATATGCACAATGGAAAGAACAACACAAAGATGACCCACCAAGCAACTTACCGCCATTTGATGTGATTGATAACGGAAAAGAATATGATGTTTTTAATATCGTGGACGATCCAGTTTGGAAAGCGAAATTTCGGGCTAAAAAGCCTCCAATTGCATACTGGTTAGAGACTCGTAAAGGGAGGAAAGCATGGTTAAAAAAGTATACACCCGGTATCCCTCACGGAAGCAAGTACAGGGTGTATTTTAACACTCCTAGCGGGCCTTTGGAACGAGTTCCTGCTTGGGCTACTTATGTGCTTCCAGATCCTGATGGAAAGCAAGCTTGTGCGGTACATTGGGAACCATCTCCTGAATTTGCATACAATTGGAAGTACAAGAGTCCAAAAGTGCCCCGTTCATTGCGTATATACGAATGCCATGTTGGAGTTAGTGGGCGTGAGCCAAAAATTTCATCTTTTGATGATTTTAAGGAGAAGGTCCTCCCACATGTAAAAGAAGCGGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAGGATTATTTCACTGTTGGCTACAGAGTGACTAATTTCTATGCCGTTAGCAGCCGTTTTGGCACCCCTGAGGATTTCAAGCGTTTGGTTGATGAAGCTCATGGACTAGGGTTGCTCGTCTTTCTAGACATTGTACATTCCTACGCAGCAGCAGACGAGATGGTTGGATTGGCGCTTTTTGATGGATCGAATGATTGTTACTTTCAAACTGGCCAAATGTTCAACTTTTCCTTTACTCCTAGGTGGGTGGAGGAATATCATATTGATGGTTTCAATTTTCATTCACTCCAATCAATGATGTATACGCACAATGGCTTTGCTTCCTTTACAGGTGATATGGAGGAGTAA

Network for GWHGAAZE002869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	432	499	8.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0005978	biological_process	glycogen biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0003844	molecular_function	1,4-alpha-glucan branching enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.562
	SRR3591706	second leaf	3.411
	SRR3591707	mature leaf	3.297
	SRR3591708	Shoot apex	6.376
	SRR3591709	Stem	2.560
	SRR3591710	White floral bud	4.083
	SRR3591711	White flower	5.352
	SRR3591712	Green floral bud	3.651
	SRR3591713	Yellow flower	3.610
SRP173429	SRR8316895	Juvenile bud stage	3.215
	SRR8316896	Juvenile bud stage	4.727
	SRR8316897	Juvenile bud stage	2.462
	SRR8316894	Third green stage	1.725
	SRR8316900	Third green stage	5.422
	SRR8316901	Third green stage	3.328
	SRR8316898	Complete white stage	1.355
	SRR8316899	Complete white stage	4.947
	SRR8316903	Complete white stage	2.464
	SRR8316902	Silver flowering stage	1.177
	SRR8316904	Silver flowering stage	2.141
	SRR8316905	Silver flowering stage	1.267
	SRR8316906	Gold flowering stage	4.203
	SRR8316907	Gold flowering stage	3.268
	SRR8316908	Gold flowering stage	4.072
SRP132670	SRR6706286	Control	8.476
	SRR6706287	Light intensity 50%	7.151
	SRR6706288	Light intensity 20%	8.169
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.877
	CNS0095593	Slightly white alabastrum(diploid) 2	0.503
	CNS0095594	Slightly white alabastrum(diploid) 3	0.935
	CNS0095595	Whole white alabastrum(diploid) 2	1.293
	CNS0095596	Whole white alabastrum(diploid) 3	0.601
	CNS0095597	Whole white alabastrum(diploid) 4	1.046
	CNS0095598	Silvery flower (diploied) 1	2.415
	CNS0095599	Silvery flower (diploied) 2	2.481
	CNS0095600	Silvery flower (diploied) 3	2.893
	CNS0095601	Golden flower (diploid) 1	1.764
	CNS0095602	Golden flower (diploid) 2	2.867
	CNS0095603	Golden flower (diploid) 3	2.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.676
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.819
	CNS0095610	Silvery flower (tetraploid) 1	5.916
	CNS0095611	Silvery flower (tetraploid) 2	5.834
	CNS0095612	Silvery flower (tetraploid) 3	4.659
	CNS0095613	Golden flower (tetraploid) 1	1.230
	CNS0095614	Golden flower (tetraploid) 2	2.700
	CNS0095615	Golden flower (tetraploid) 3	1.017
CRA001975	CRR073297	Stem 1	4.463
	CRR073298	Stem 2	2.973
	CRR073299	Stem 3	4.251
	CRR073300	Leaf 1	3.058
	CRR073301	Leaf 2	3.916
	CRR073302	Leaf 3	2.476
	CRR073303	Juvenile bud 1	2.757
	CRR073304	Juvenile bud 2	2.489
	CRR073305	Juvenile bud 3	4.142
	CRR073306	Third green 1	0.834
	CRR073307	Third green 2	0.351
	CRR073308	Third green 3	0.748
	CRR073309	Second white 1	0.783
	CRR073310	Second white 2	1.363
	CRR073311	Second white 3	0.943
	CRR073312	Silver flowering 1	0.611
	CRR073313	Silver flowering 2	0.885
	CRR073314	Silver flowering 3	2.219
	CRR073315	Gold flowering 1	2.334
	CRR073316	Gold flowering 2	4.985
	CRR073317	Gold flowering 3	1.828
	CRR073318	Tawny withering 1	1.245
	CRR073319	Tawny withering 2	1.035
	CRR073320	Tawny withering 3	1.036