Gene detail

Detail information of GWHGAAZE002852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644461.1	7.515E-119	PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X3 [Vitis vinifera]
COG	YP_004178415.1	4E-20	tetraacyldisaccharide 4'-kinase
Swissprot	tr\|Q8LEA0\|LPXK_ARATH	4E-90	Probable tetraacyldisaccharide 4'-kinase, mitochondrial (Precursor)
trEMBL	tr\|D7T7Z4\|D7T7Z4_VITVI	2E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26653.3}
TAIR10	AT3G20480.1	9E-75	tetraacyldisaccharide 4'-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87420763	87422664	+
GWHAAZE00000001	mRNA	87420763	87422664	+
GWHAAZE00000001	exon	87420763	87420996	+
GWHAAZE00000001	exon	87421129	87421278	+
GWHAAZE00000001	exon	87421410	87421619	+
GWHAAZE00000001	exon	87422206	87422286	+
GWHAAZE00000001	exon	87422509	87422664	+
GWHAAZE00000001	CDS	87420763	87420996	+
GWHAAZE00000001	CDS	87421129	87421278	+
GWHAAZE00000001	CDS	87421410	87421619	+
GWHAAZE00000001	CDS	87422206	87422286	+
GWHAAZE00000001	CDS	87422509	87422664	+

Transcript Sequence
>GWHTAAZE002856 GGTTATGGTGGTGCTGATGAAGCTAAAATGCTTCAAAGGCATTTGGAGGGGACATCAGCAAAAATTGGTGTTGGTGCCAACAGGGCAGCTACTGCTACGTGCTTTATTGGAAAGTACGGTTGTGTGAATCCCCATAGTATCAAATTCTTTGACAGACTCTGCTCTCATCAGAATGCTGAAAGTCATCTTGATTCAGAAAAAATTGGGGTTGCAATTCTAGATGATGGAATGCAGCATTTGAGTTTGTGGCGAGACTTGGAGATTCTAATGGTGAATGGGATGATGCCATGGGGAAACCATCAATTACTTCCCCTTGGACCACTACGGGAACCTTTGACAGCACTCAGCCGAGCAGATATTGTGGTAGTCCACCACGCAGACTTGGTATCTGAGCAGAATATAAAAGTCATTGAATCAACAATTCGCGAGGTCAAGGAATCTGTTCCGATATATTTCACTAGAATGAAACCTTCACATTTCTTCAAAGCGGGAAAAGTTTCATGTAAATTACCTCTGGGAGCTATATATAATATGACTGTATTGTGTGTTTCTGCAATTGGTTCCGCAAACTCCTTTGTTCAGAGAGTTGAGAAGGATCTCAACATGATCAGATTGAGACTTGAAAAACTACAGGCCAAGTTTGCTTCCAAGCCATTCGTTGTTTTAACTGAAAAGGATTATGACAGAGACCCAGAGATTCTTAAGCATTTGATTGTTTTTGATGTTTTGGTGCTGTGTTCTAAGTTGGAAATTATACCTCATAAAGGTGTGTCTGAAGATAGCTTCAAAAGGTTGTTGACAAAGCTCTTGGAACTAAATTATCAGGCATAA

Network for GWHGAAZE002852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02606.15	LpxK	6	265	1.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00912	lpxK	Metabolic pathways	map01100
K00912	lpxK	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009245	biological_process	lipid A biosynthetic process
GO:0005524	molecular_function	ATP binding
GO:0009029	molecular_function	tetraacyldisaccharide 4'-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.587
	SRR3591706	second leaf	3.439
	SRR3591707	mature leaf	1.274
	SRR3591708	Shoot apex	6.352
	SRR3591709	Stem	2.458
	SRR3591710	White floral bud	2.597
	SRR3591711	White flower	1.803
	SRR3591712	Green floral bud	5.290
	SRR3591713	Yellow flower	0.154
SRP173429	SRR8316895	Juvenile bud stage	4.979
	SRR8316896	Juvenile bud stage	6.005
	SRR8316897	Juvenile bud stage	3.045
	SRR8316894	Third green stage	2.499
	SRR8316900	Third green stage	6.915
	SRR8316901	Third green stage	5.534
	SRR8316898	Complete white stage	0.113
	SRR8316899	Complete white stage	4.428
	SRR8316903	Complete white stage	0.683
	SRR8316902	Silver flowering stage	0.365
	SRR8316904	Silver flowering stage	0.330
	SRR8316905	Silver flowering stage	0.173
	SRR8316906	Gold flowering stage	0.686
	SRR8316907	Gold flowering stage	0.618
	SRR8316908	Gold flowering stage	0.998
SRP132670	SRR6706286	Control	4.476
	SRR6706287	Light intensity 50%	5.939
	SRR6706288	Light intensity 20%	6.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.840
	CNS0095593	Slightly white alabastrum(diploid) 2	7.120
	CNS0095594	Slightly white alabastrum(diploid) 3	2.151
	CNS0095595	Whole white alabastrum(diploid) 2	3.926
	CNS0095596	Whole white alabastrum(diploid) 3	3.807
	CNS0095597	Whole white alabastrum(diploid) 4	3.496
	CNS0095598	Silvery flower (diploied) 1	3.520
	CNS0095599	Silvery flower (diploied) 2	3.171
	CNS0095600	Silvery flower (diploied) 3	1.464
	CNS0095601	Golden flower (diploid) 1	2.035
	CNS0095602	Golden flower (diploid) 2	2.107
	CNS0095603	Golden flower (diploid) 3	2.566
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.810
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.963
	CNS0095610	Silvery flower (tetraploid) 1	1.169
	CNS0095611	Silvery flower (tetraploid) 2	1.116
	CNS0095612	Silvery flower (tetraploid) 3	0.673
	CNS0095613	Golden flower (tetraploid) 1	0.370
	CNS0095614	Golden flower (tetraploid) 2	0.800
	CNS0095615	Golden flower (tetraploid) 3	0.100
CRA001975	CRR073297	Stem 1	5.734
	CRR073298	Stem 2	6.098
	CRR073299	Stem 3	7.085
	CRR073300	Leaf 1	5.541
	CRR073301	Leaf 2	6.913
	CRR073302	Leaf 3	5.187
	CRR073303	Juvenile bud 1	3.443
	CRR073304	Juvenile bud 2	2.146
	CRR073305	Juvenile bud 3	2.536
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.483
	CRR073308	Third green 3	1.157
	CRR073309	Second white 1	0.821
	CRR073310	Second white 2	0.423
	CRR073311	Second white 3	1.066
	CRR073312	Silver flowering 1	0.427
	CRR073313	Silver flowering 2	0.368
	CRR073314	Silver flowering 3	0.195
	CRR073315	Gold flowering 1	2.687
	CRR073316	Gold flowering 2	5.428
	CRR073317	Gold flowering 3	1.669
	CRR073318	Tawny withering 1	5.918
	CRR073319	Tawny withering 2	4.036
	CRR073320	Tawny withering 3	6.367