Gene detail

Detail information of GWHGAAZE002800

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268435.1	3.7134E-142	gibberellin 2-beta-dioxygenase 8-like [Vitis vinifera]
COG	YP_003550811.1	6E-23	oxidoreductase
Swissprot	tr\|O49561\|G2OX8_ARATH	4E-120	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|A5B7X5\|A5B7X5_VITVI	1E-142	GA2ox6 {ECO:0000313\|EMBL:AGQ42620.1}
TAIR10	AT4G21200.1	5E-98	gibberellin 2-oxidase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86500373	86504123	-
GWHAAZE00000001	mRNA	86500373	86504123	-
GWHAAZE00000001	exon	86500373	86500606	-
GWHAAZE00000001	exon	86500923	86501262	-
GWHAAZE00000001	exon	86503645	86504123	-
GWHAAZE00000001	CDS	86503645	86504123	-
GWHAAZE00000001	CDS	86500923	86501262	-
GWHAAZE00000001	CDS	86500373	86500606	-

Transcript Sequence
>GWHTAAZE002804 ATGATGGAATCAGACCCTCCATTTCTAGAAACGCACAAAACCCTTTTCACTGACTTGTTGACCCAAGCACAAAAAGAAGAAAAACCACTAGTACTATACAATAAAGGTGATGATGGTGGTCGAGAAGAACAGTATTACGACCTCCCCCTCATTGATCTAAACTGCTTAGGCCTCAGCGAGTTTGAGAGGAGAGAGTGCGGTAGAGAAATTGCGGAGGCCGCCAGAAAGTGGGGTTTCTTTCAAGTAGTGAATCATGGTATCTCTCAAGATGTTTTTGATAGGACGAAAATTGAGCAAGTTAAGTTGTTTAGGCAACCATTTGTAAAGAAGGCTAATGAGAAGCTTTTGAACTTGTCGACCGGTTGTTACCGGTTTGGGAACCCGAATGCCACTTCCCTCAAGGATTTCTCGTGGTCCGAGGCTTTTCACATTCCTCTTTCCAGCATTTCTGGTTTGAGGGACTTCAATTGCCTAATTAGGTCGCCAATAGAGGAATTCGCAGAACTGGTGTCTGATCTTGCTAAAAGAATGGCTGAAATATTAGTAGAGAATCTTCAAGGGACTACTACTAGTAGCTCATTTTTCTCAGAAATAAACTGCTTGCCAAGTTCATGTTATCTTCGAATGAACAGATATCCACCATGCCCATTATCTTCCAAGATTTATGGTTTAGTGCCACACACTGATAGTGCCTTCCTCACCATATTGTACCAGCTGGACAATCATTTAGGAGGACTCCAGCTTCTCAAAGATGGTCAATGGCTTACTGTTAAACCTAATCCTCATTCTTTGATCATCAACATCGGCGATTTATTCCAGGCTTGGAGCAATGGTGTTTACAAGAGTATTGAGCATCAAGTGATAACTAATGGAGAAGTAGAGAGGTTGTCAGTTGCCTACTTTTTATGTCCTTCCAATGAGACTGTGATTCAAAGTTGTATTCAACCTTCAATCTACAGAAAGTTTAGCTTCGGAGAATTCAGACAACAAATTCAACGGGATGTTAAATCTACTGGCAGCAAAGTAGGGCTCTCAAGGTTTCTCATCACATGA

Network for GWHGAAZE002800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	48	144	5.60E-14
PF03171.21	2OG-FeII_Oxy	208	304	1.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.224
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.417
	SRR3591711	White flower	0.878
	SRR3591712	Green floral bud	0.350
	SRR3591713	Yellow flower	0.674
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.105
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.078
	SRR8316901	Third green stage	0.057
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	0.042
	SRR8316903	Complete white stage	0.412
	SRR8316902	Silver flowering stage	0.564
	SRR8316904	Silver flowering stage	0.584
	SRR8316905	Silver flowering stage	0.286
	SRR8316906	Gold flowering stage	0.611
	SRR8316907	Gold flowering stage	0.983
	SRR8316908	Gold flowering stage	0.622
SRP132670	SRR6706286	Control	0.091
	SRR6706287	Light intensity 50%	0.087
	SRR6706288	Light intensity 20%	0.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.040
	CNS0095594	Slightly white alabastrum(diploid) 3	0.091
	CNS0095595	Whole white alabastrum(diploid) 2	0.088
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.831
	CNS0095599	Silvery flower (diploied) 2	1.645
	CNS0095600	Silvery flower (diploied) 3	1.667
	CNS0095601	Golden flower (diploid) 1	3.723
	CNS0095602	Golden flower (diploid) 2	2.604
	CNS0095603	Golden flower (diploid) 3	3.488
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	10.271
	CNS0095611	Silvery flower (tetraploid) 2	8.796
	CNS0095612	Silvery flower (tetraploid) 3	2.620
	CNS0095613	Golden flower (tetraploid) 1	7.266
	CNS0095614	Golden flower (tetraploid) 2	21.172
	CNS0095615	Golden flower (tetraploid) 3	1.321
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.016
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	1.383
	CRR073307	Third green 2	3.698
	CRR073308	Third green 3	1.714
	CRR073309	Second white 1	1.296
	CRR073310	Second white 2	1.532
	CRR073311	Second white 3	0.467
	CRR073312	Silver flowering 1	0.387
	CRR073313	Silver flowering 2	0.428
	CRR073314	Silver flowering 3	0.134
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.366
	CRR073319	Tawny withering 2	0.037
	CRR073320	Tawny withering 3	0.000