Detail information of GWHGAAZE002668


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002317481.10hypothetical protein POPTR_0011s11570g [Populus trichocarpa]
COGYP_004628567.15E-55tyrosine/nicotianamine aminotransferase
Swissprottr|Q9FN30|TAT2_ARATH0Probable aminotransferase TAT2
trEMBLtr|B9HZQ9|B9HZQ9_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE98093.1}
TAIR10AT5G53970.13E-176Tyrosine transaminase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8380225983805559-
GWHAAZE00000001mRNA8380225983805559-
GWHAAZE00000001exon8380225983802386-
GWHAAZE00000001exon8380255083802643-
GWHAAZE00000001exon8380273783802892-
GWHAAZE00000001exon8380307783803136-
GWHAAZE00000001exon8380329783803515-
GWHAAZE00000001exon8380361883803957-
GWHAAZE00000001exon8380524683805559-
GWHAAZE00000001CDS8380524683805559-
GWHAAZE00000001CDS8380361883803957-
GWHAAZE00000001CDS8380329783803515-
GWHAAZE00000001CDS8380307783803136-
GWHAAZE00000001CDS8380273783802892-
GWHAAZE00000001CDS8380255083802643-
GWHAAZE00000001CDS8380225983802386-
Transcript Sequence

Network for GWHGAAZE002668

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.22Aminotran_1_2594222.30E-53
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00815TAT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960
Novobiocin biosynthesismap00401

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0009058biological_processbiosynthetic process
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.960
SRR3591706second leaf12.610
SRR3591707mature leaf15.715
SRR3591708Shoot apex11.877
SRR3591709Stem7.754
SRR3591710White floral bud170.553
SRR3591711White flower668.992
SRR3591712Green floral bud17.928
SRR3591713Yellow flower2281.737
SRP173429 SRR8316895Juvenile bud stage 4.555
SRR8316896Juvenile bud stage 9.831
SRR8316897Juvenile bud stage 5.263
SRR8316894Third green stage 4.248
SRR8316900Third green stage 20.450
SRR8316901Third green stage 18.188
SRR8316898Complete white stage 33.584
SRR8316899Complete white stage 21.698
SRR8316903Complete white stage 52.682
SRR8316902Silver flowering stage164.586
SRR8316904Silver flowering stage194.858
SRR8316905Silver flowering stage110.147
SRR8316906Gold flowering stage 811.549
SRR8316907Gold flowering stage 601.134
SRR8316908Gold flowering stage 672.813
SRP132670SRR6706286Control28.228
SRR6706287Light intensity 50%28.061
SRR6706288Light intensity 20%24.697
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.154
CNS0095593Slightly white alabastrum(diploid) 29.701
CNS0095594Slightly white alabastrum(diploid) 315.506
CNS0095595Whole white alabastrum(diploid) 212.108
CNS0095596Whole white alabastrum(diploid) 315.908
CNS0095597Whole white alabastrum(diploid) 413.992
CNS0095598Silvery flower (diploied) 1198.977
CNS0095599Silvery flower (diploied) 2220.474
CNS0095600Silvery flower (diploied) 3667.246
CNS0095601Golden flower (diploid) 1670.758
CNS0095602Golden flower (diploid) 21361.849
CNS0095603Golden flower (diploid) 31314.597
CNS0095604Slightly white alabastrum(tetraploid) 18.053
CNS0095605Slightly white alabastrum(tetraploid) 27.881
CNS0095606Slightly white alabastrum(tetraploid) 39.887
CNS0095607Whole white alabastrum(tetraploid) 110.025
CNS0095608Whole white alabastrum(tetraploid) 210.090
CNS0095609Whole white alabastrum(tetraploid) 316.509
CNS0095610Silvery flower (tetraploid) 1585.360
CNS0095611Silvery flower (tetraploid) 21045.630
CNS0095612Silvery flower (tetraploid) 31344.318
CNS0095613Golden flower (tetraploid) 11824.031
CNS0095614Golden flower (tetraploid) 21384.747
CNS0095615Golden flower (tetraploid) 35002.982
CRA001975CRR073297Stem 112.127
CRR073298Stem 213.552
CRR073299Stem 312.028
CRR073300Leaf 119.574
CRR073301Leaf 221.013
CRR073302Leaf 320.943
CRR073303Juvenile bud 124.450
CRR073304Juvenile bud 227.314
CRR073305Juvenile bud 318.155
CRR073306Third green 161.331
CRR073307Third green 268.192
CRR073308Third green 350.692
CRR073309Second white 1232.340
CRR073310Second white 2318.550
CRR073311Second white 3437.593
CRR073312Silver flowering 1667.199
CRR073313Silver flowering 2491.727
CRR073314Silver flowering 3614.300
CRR073315Gold flowering 126.009
CRR073316Gold flowering 230.049
CRR073317Gold flowering 314.981
CRR073318Tawny withering 111.471
CRR073319Tawny withering 27.589
CRR073320Tawny withering 34.178