Detail information of GWHGAAZE002583


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011082815.10PREDICTED: uncharacterized protein LOC105165486 [Sesamum indicum]
trEMBLtr|A0A068UD02|A0A068UD02_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP06069.1}
TAIR10AT1G17040.13E-126SH2 domain protein A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8221938682225982-
GWHAAZE00000001mRNA8221938682225982-
GWHAAZE00000001exon8222574082225982-
GWHAAZE00000001exon8222492782225136-
GWHAAZE00000001exon8222473482224823-
GWHAAZE00000001exon8222418482224261-
GWHAAZE00000001exon8222392382224087-
GWHAAZE00000001exon8222284882223204-
GWHAAZE00000001exon8222199582222237-
GWHAAZE00000001exon8222025482220603-
GWHAAZE00000001exon8221938682219542-
GWHAAZE00000001CDS8222574082225982-
GWHAAZE00000001CDS8222492782225136-
GWHAAZE00000001CDS8222473482224823-
GWHAAZE00000001CDS8222418482224261-
GWHAAZE00000001CDS8222392382224087-
GWHAAZE00000001CDS8222284882223204-
GWHAAZE00000001CDS8222199582222237-
GWHAAZE00000001CDS8222025482220603-
GWHAAZE00000001CDS8221938682219542-
Transcript Sequence

Network for GWHGAAZE002583

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySTAT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.101
SRR3591706second leaf7.409
SRR3591707mature leaf10.640
SRR3591708Shoot apex9.276
SRR3591709Stem14.629
SRR3591710White floral bud9.673
SRR3591711White flower18.789
SRR3591712Green floral bud8.499
SRR3591713Yellow flower12.972
SRP173429 SRR8316895Juvenile bud stage 8.189
SRR8316896Juvenile bud stage 12.146
SRR8316897Juvenile bud stage 4.844
SRR8316894Third green stage 4.279
SRR8316900Third green stage 9.417
SRR8316901Third green stage 9.169
SRR8316898Complete white stage 2.832
SRR8316899Complete white stage 14.805
SRR8316903Complete white stage 7.147
SRR8316902Silver flowering stage5.439
SRR8316904Silver flowering stage7.404
SRR8316905Silver flowering stage3.833
SRR8316906Gold flowering stage 12.045
SRR8316907Gold flowering stage 11.291
SRR8316908Gold flowering stage 14.605
SRP132670SRR6706286Control8.309
SRR6706287Light intensity 50%7.887
SRR6706288Light intensity 20%7.983
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.587
CNS0095593Slightly white alabastrum(diploid) 25.341
CNS0095594Slightly white alabastrum(diploid) 35.049
CNS0095595Whole white alabastrum(diploid) 25.884
CNS0095596Whole white alabastrum(diploid) 34.556
CNS0095597Whole white alabastrum(diploid) 45.044
CNS0095598Silvery flower (diploied) 19.964
CNS0095599Silvery flower (diploied) 29.854
CNS0095600Silvery flower (diploied) 315.353
CNS0095601Golden flower (diploid) 111.730
CNS0095602Golden flower (diploid) 214.644
CNS0095603Golden flower (diploid) 313.718
CNS0095604Slightly white alabastrum(tetraploid) 16.658
CNS0095605Slightly white alabastrum(tetraploid) 25.098
CNS0095606Slightly white alabastrum(tetraploid) 315.887
CNS0095607Whole white alabastrum(tetraploid) 14.858
CNS0095608Whole white alabastrum(tetraploid) 24.302
CNS0095609Whole white alabastrum(tetraploid) 37.767
CNS0095610Silvery flower (tetraploid) 117.823
CNS0095611Silvery flower (tetraploid) 220.114
CNS0095612Silvery flower (tetraploid) 314.123
CNS0095613Golden flower (tetraploid) 18.909
CNS0095614Golden flower (tetraploid) 214.758
CNS0095615Golden flower (tetraploid) 311.502
CRA001975CRR073297Stem 111.275
CRR073298Stem 211.522
CRR073299Stem 310.381
CRR073300Leaf 18.395
CRR073301Leaf 29.125
CRR073302Leaf 36.391
CRR073303Juvenile bud 16.583
CRR073304Juvenile bud 26.619
CRR073305Juvenile bud 39.230
CRR073306Third green 12.434
CRR073307Third green 23.117
CRR073308Third green 32.294
CRR073309Second white 15.374
CRR073310Second white 26.102
CRR073311Second white 36.809
CRR073312Silver flowering 16.949
CRR073313Silver flowering 24.882
CRR073314Silver flowering 35.583
CRR073315Gold flowering 19.245
CRR073316Gold flowering 215.285
CRR073317Gold flowering 37.083
CRR073318Tawny withering 15.360
CRR073319Tawny withering 25.297
CRR073320Tawny withering 36.805