Detail information of GWHGAAZE002514


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006447872.10hypothetical protein CICLE_v10014741mg [Citrus clementina]
COGYP_007066226.10glucose-1-phosphate adenylyltransferase
Swissprottr|Q9M462|GLGS_BRANA0Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic (Precursor)
trEMBLtr|V4U595|V4U595_9ROSI0Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565}
TAIR10AT5G48300.10ADP glucose pyrophosphorylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8022446980231029-
GWHAAZE00000001mRNA8022446980231029-
GWHAAZE00000001exon8023068280231029-
GWHAAZE00000001exon8022817780228473-
GWHAAZE00000001exon8022764280227911-
GWHAAZE00000001exon8022734480227523-
GWHAAZE00000001exon8022638080226483-
GWHAAZE00000001exon8022615080226261-
GWHAAZE00000001exon8022593180226029-
GWHAAZE00000001exon8022567780225796-
GWHAAZE00000001exon8022446980224767-
GWHAAZE00000001CDS8023068280231029-
GWHAAZE00000001CDS8022817780228473-
GWHAAZE00000001CDS8022764280227911-
GWHAAZE00000001CDS8022734480227523-
GWHAAZE00000001CDS8022638080226483-
GWHAAZE00000001CDS8022615080226261-
GWHAAZE00000001CDS8022593180226029-
GWHAAZE00000001CDS8022567780225796-
GWHAAZE00000001CDS8022465180224767-
GWHAAZE00000001three_prime_UTR8022446980224650-
Transcript Sequence

Network for GWHGAAZE002514

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00483.24NTP_transferase1203931.90E-68
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00975glgC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName
GO:0005978biological_processglycogen biosynthetic process
GO:0009058biological_processbiosynthetic process
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.385
SRR3591706second leaf57.634
SRR3591707mature leaf63.414
SRR3591708Shoot apex27.906
SRR3591709Stem71.030
SRR3591710White floral bud8.682
SRR3591711White flower7.656
SRR3591712Green floral bud13.909
SRR3591713Yellow flower1.781
SRP173429 SRR8316895Juvenile bud stage 18.969
SRR8316896Juvenile bud stage 24.274
SRR8316897Juvenile bud stage 10.399
SRR8316894Third green stage 10.963
SRR8316900Third green stage 22.468
SRR8316901Third green stage 20.711
SRR8316898Complete white stage 3.828
SRR8316899Complete white stage 22.524
SRR8316903Complete white stage 7.563
SRR8316902Silver flowering stage11.624
SRR8316904Silver flowering stage15.025
SRR8316905Silver flowering stage8.678
SRR8316906Gold flowering stage 24.459
SRR8316907Gold flowering stage 23.625
SRR8316908Gold flowering stage 26.875
SRP132670SRR6706286Control12.376
SRR6706287Light intensity 50%12.886
SRR6706288Light intensity 20%13.535
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.465
CNS0095593Slightly white alabastrum(diploid) 221.678
CNS0095594Slightly white alabastrum(diploid) 323.821
CNS0095595Whole white alabastrum(diploid) 218.333
CNS0095596Whole white alabastrum(diploid) 319.456
CNS0095597Whole white alabastrum(diploid) 417.579
CNS0095598Silvery flower (diploied) 132.232
CNS0095599Silvery flower (diploied) 234.368
CNS0095600Silvery flower (diploied) 316.275
CNS0095601Golden flower (diploid) 137.820
CNS0095602Golden flower (diploid) 220.265
CNS0095603Golden flower (diploid) 318.457
CNS0095604Slightly white alabastrum(tetraploid) 125.826
CNS0095605Slightly white alabastrum(tetraploid) 225.222
CNS0095606Slightly white alabastrum(tetraploid) 328.875
CNS0095607Whole white alabastrum(tetraploid) 117.379
CNS0095608Whole white alabastrum(tetraploid) 214.916
CNS0095609Whole white alabastrum(tetraploid) 322.936
CNS0095610Silvery flower (tetraploid) 115.348
CNS0095611Silvery flower (tetraploid) 223.050
CNS0095612Silvery flower (tetraploid) 317.602
CNS0095613Golden flower (tetraploid) 110.256
CNS0095614Golden flower (tetraploid) 218.137
CNS0095615Golden flower (tetraploid) 35.321
CRA001975CRR073297Stem 122.730
CRR073298Stem 217.814
CRR073299Stem 319.892
CRR073300Leaf 111.904
CRR073301Leaf 210.410
CRR073302Leaf 315.833
CRR073303Juvenile bud 112.471
CRR073304Juvenile bud 210.843
CRR073305Juvenile bud 310.192
CRR073306Third green 14.951
CRR073307Third green 21.700
CRR073308Third green 33.682
CRR073309Second white 116.959
CRR073310Second white 216.047
CRR073311Second white 318.113
CRR073312Silver flowering 120.589
CRR073313Silver flowering 214.900
CRR073314Silver flowering 319.139
CRR073315Gold flowering 114.065
CRR073316Gold flowering 214.411
CRR073317Gold flowering 310.580
CRR073318Tawny withering 19.274
CRR073319Tawny withering 29.701
CRR073320Tawny withering 310.280