Detail information of GWHGAAZE002480


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006357635.10PREDICTED: putative protein FAR1-RELATED SEQUENCE 10-like isoform X1 [Solanum tuberosum]
Swissprottr|Q9LKR4|FRS10_ARATH0Putative protein FAR1-RELATED SEQUENCE 10
trEMBLtr|F6HHP5|F6HHP5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51741.1}
TAIR10AT5G28530.10FAR1-related sequence 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7960466779607603-
GWHAAZE00000001mRNA7960466779607603-
GWHAAZE00000001exon7960657879607603-
GWHAAZE00000001exon7960580479606247-
GWHAAZE00000001exon7960466779605272-
GWHAAZE00000001CDS7960657879607603-
GWHAAZE00000001CDS7960580479606247-
GWHAAZE00000001CDS7960466779605272-
Transcript Sequence

Network for GWHGAAZE002480

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1701616.20E-25
PF10551.10MULE2933864.40E-19
PF04434.18SWIM5745971.70E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.144
SRR3591706second leaf5.065
SRR3591707mature leaf6.825
SRR3591708Shoot apex8.748
SRR3591709Stem7.713
SRR3591710White floral bud5.847
SRR3591711White flower8.019
SRR3591712Green floral bud6.668
SRR3591713Yellow flower4.803
SRP173429 SRR8316895Juvenile bud stage 3.464
SRR8316896Juvenile bud stage 4.634
SRR8316897Juvenile bud stage 1.680
SRR8316894Third green stage 1.776
SRR8316900Third green stage 4.694
SRR8316901Third green stage 4.436
SRR8316898Complete white stage 1.910
SRR8316899Complete white stage 5.241
SRR8316903Complete white stage 3.103
SRR8316902Silver flowering stage2.318
SRR8316904Silver flowering stage3.846
SRR8316905Silver flowering stage1.912
SRR8316906Gold flowering stage 5.802
SRR8316907Gold flowering stage 4.937
SRR8316908Gold flowering stage 5.433
SRP132670SRR6706286Control1.160
SRR6706287Light intensity 50%1.435
SRR6706288Light intensity 20%2.078
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.906
CNS0095593Slightly white alabastrum(diploid) 22.279
CNS0095594Slightly white alabastrum(diploid) 32.645
CNS0095595Whole white alabastrum(diploid) 23.123
CNS0095596Whole white alabastrum(diploid) 32.548
CNS0095597Whole white alabastrum(diploid) 43.661
CNS0095598Silvery flower (diploied) 15.209
CNS0095599Silvery flower (diploied) 23.374
CNS0095600Silvery flower (diploied) 37.268
CNS0095601Golden flower (diploid) 14.773
CNS0095602Golden flower (diploid) 26.993
CNS0095603Golden flower (diploid) 37.605
CNS0095604Slightly white alabastrum(tetraploid) 14.420
CNS0095605Slightly white alabastrum(tetraploid) 24.134
CNS0095606Slightly white alabastrum(tetraploid) 36.873
CNS0095607Whole white alabastrum(tetraploid) 14.786
CNS0095608Whole white alabastrum(tetraploid) 22.598
CNS0095609Whole white alabastrum(tetraploid) 35.066
CNS0095610Silvery flower (tetraploid) 16.620
CNS0095611Silvery flower (tetraploid) 27.256
CNS0095612Silvery flower (tetraploid) 34.617
CNS0095613Golden flower (tetraploid) 13.541
CNS0095614Golden flower (tetraploid) 26.285
CNS0095615Golden flower (tetraploid) 37.504
CRA001975CRR073297Stem 12.941
CRR073298Stem 23.347
CRR073299Stem 32.706
CRR073300Leaf 13.811
CRR073301Leaf 22.158
CRR073302Leaf 31.586
CRR073303Juvenile bud 12.578
CRR073304Juvenile bud 20.948
CRR073305Juvenile bud 31.768
CRR073306Third green 10.584
CRR073307Third green 20.475
CRR073308Third green 30.627
CRR073309Second white 11.211
CRR073310Second white 20.852
CRR073311Second white 31.087
CRR073312Silver flowering 10.470
CRR073313Silver flowering 20.739
CRR073314Silver flowering 30.435
CRR073315Gold flowering 12.848
CRR073316Gold flowering 24.062
CRR073317Gold flowering 31.283
CRR073318Tawny withering 13.409
CRR073319Tawny withering 22.081
CRR073320Tawny withering 33.303