Gene detail

Detail information of GWHGAAZE002457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN43959.1	0	DAZ-associated protein 1 [Glycine soja]
COG	YP_003709088.1	4E-15	RNA-binding protein
Swissprot	tr\|Q8W034\|RNP1_ARATH	1E-73	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|V7BDF1\|V7BDF1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14501.1}
TAIR10	AT3G07810.1	3E-126	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79115925	79120144	-
GWHAAZE00000001	mRNA	79115925	79120144	-
GWHAAZE00000001	exon	79119923	79120144	-
GWHAAZE00000001	exon	79118523	79119714	-
GWHAAZE00000001	exon	79115925	79115938	-
GWHAAZE00000001	CDS	79119923	79120144	-
GWHAAZE00000001	CDS	79118523	79119714	-
GWHAAZE00000001	CDS	79115925	79115938	-

Transcript Sequence
>GWHTAAZE002461 ATGCAATCGGATCTTGGCAAGTTATTTATCGGTGGAATTTCTTGGGACACAAATGAAGAACGTGTGAAGGAGTATTTTAGTGCTTATGGCGAGGTGTTGGAGGCTGTAATTATGAAGGACCGAACCACAGGGCGCGCACGTGGTTTCGGCTTCGTTGTATTTGCAGACCCTGCTGTTGCCGAAAAAGTCATCAAGGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAAAAAGCTGTTCCTAGGGATGACCAAAGCACAATGAGTAGAAACAGTAGTAGCATTCAGGGTTCTCCGGGTCAAGCACGCACTCGAAAAATATTTGTAGGAGGTTTAGCATCCACGGTGACGGAAAACGACTTCAAAAGTTATTTCGAGCAATTTGGGACAATCACAGACGTGGTGGTGATGTATGACCACAATACTCAACGGCCAAGAGGATTTGGGTTCATCACTTATGATTCAGAGGATGCAGTTGACAAAGTATTGCTCAGAACTTTCCATGAGCTAAATGGTAAAATGGTAGAGGTTAAACGCGCGGTTCCTAAAGAGTTATCACCTAGCCCTAGCCGAAGCTCACTCAGTGGATATAACTATGGTGGTTTGAGTAGGATTAATAACTTACTTAATGGCTATAATCAAGGATACTCACCAACTGCAGTTGGAGCGTACGACGTGAGAATGGATGGTAGGTTCAACCCACTTGGTGCTGGAAGAAGTGGGTTCGCTCCATTTGGTTCTGGTTATGGAATGGGGTTGAACTTTGAACAAGGGATGAACCCAAATTACGGTGGAAATGCAGACTTCAATAATAGTACTCTTAGCTATGGGCGTGGAGTGAACCCTTATTACAGTGGTAGTTCAAATCGGTTTGGTAGTCCTATTGGTTTCGATGGTGGGAGTGGAGGAAATAGTTCTTTTTTTAGTTCAACTCCTCGAAATTTGTGGGGTAATGGGGGGCTTAACTATAATACAAGCTCTACGAATTCGAGTGCTTTTGTGGGGTCCGGAAGTGGTGGCATTGGAGGTGGTTCCTTTGGCAATAGTGGTGTTAATTGGAGTCCTTCTCCAATTTCACCTCAAGGAAGAGGGGTCTCAAGCCAGAGTGCGAATCTTGGTTATGGAGGTGGTGATAACAGTTATAGTTTGGGAGCGGGTGGGTACGGAAGAAACAGTGCAACTAGTGGTGGCCCAAATGCTGCATCAAATGGTGGCTATGATGGGGCTTTTTCCGACTTCTATGGAAGTGCTTCGGTATATGGGGACCCCACGTGGCGCTCATCCAATTCTGAGAGGGAGGAATCTGGTTCATTTGGTTATGGGCTTGGCGGTGGAGCCTCTGATGTCCAGGTTAAAAGTTCCCCGGGTTATGTTGGTGGTTATAGCGTTACTAAGAGACAGACAAATAGAGGAATTGCTGGGTAG

Network for GWHGAAZE002457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	69	4.50E-16
PF00076.23	RRM_1	108	165	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.642
	SRR3591706	second leaf	16.341
	SRR3591707	mature leaf	16.359
	SRR3591708	Shoot apex	17.360
	SRR3591709	Stem	49.025
	SRR3591710	White floral bud	38.189
	SRR3591711	White flower	30.901
	SRR3591712	Green floral bud	46.090
	SRR3591713	Yellow flower	18.320
SRP173429	SRR8316895	Juvenile bud stage	49.880
	SRR8316896	Juvenile bud stage	78.216
	SRR8316897	Juvenile bud stage	50.732
	SRR8316894	Third green stage	15.044
	SRR8316900	Third green stage	48.318
	SRR8316901	Third green stage	59.228
	SRR8316898	Complete white stage	15.863
	SRR8316899	Complete white stage	43.875
	SRR8316903	Complete white stage	29.171
	SRR8316902	Silver flowering stage	15.414
	SRR8316904	Silver flowering stage	23.899
	SRR8316905	Silver flowering stage	10.259
	SRR8316906	Gold flowering stage	30.148
	SRR8316907	Gold flowering stage	32.311
	SRR8316908	Gold flowering stage	33.107
SRP132670	SRR6706286	Control	49.332
	SRR6706287	Light intensity 50%	52.503
	SRR6706288	Light intensity 20%	54.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.302
	CNS0095593	Slightly white alabastrum(diploid) 2	35.293
	CNS0095594	Slightly white alabastrum(diploid) 3	36.246
	CNS0095595	Whole white alabastrum(diploid) 2	42.026
	CNS0095596	Whole white alabastrum(diploid) 3	38.378
	CNS0095597	Whole white alabastrum(diploid) 4	32.724
	CNS0095598	Silvery flower (diploied) 1	32.678
	CNS0095599	Silvery flower (diploied) 2	37.475
	CNS0095600	Silvery flower (diploied) 3	40.284
	CNS0095601	Golden flower (diploid) 1	31.944
	CNS0095602	Golden flower (diploid) 2	35.180
	CNS0095603	Golden flower (diploid) 3	36.057
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.620
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.946
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.815
	CNS0095610	Silvery flower (tetraploid) 1	37.881
	CNS0095611	Silvery flower (tetraploid) 2	31.390
	CNS0095612	Silvery flower (tetraploid) 3	34.757
	CNS0095613	Golden flower (tetraploid) 1	23.485
	CNS0095614	Golden flower (tetraploid) 2	31.777
	CNS0095615	Golden flower (tetraploid) 3	25.515
CRA001975	CRR073297	Stem 1	28.880
	CRR073298	Stem 2	25.355
	CRR073299	Stem 3	16.747
	CRR073300	Leaf 1	35.744
	CRR073301	Leaf 2	39.869
	CRR073302	Leaf 3	17.470
	CRR073303	Juvenile bud 1	25.031
	CRR073304	Juvenile bud 2	20.274
	CRR073305	Juvenile bud 3	24.850
	CRR073306	Third green 1	25.736
	CRR073307	Third green 2	21.526
	CRR073308	Third green 3	24.125
	CRR073309	Second white 1	14.636
	CRR073310	Second white 2	16.182
	CRR073311	Second white 3	10.850
	CRR073312	Silver flowering 1	11.991
	CRR073313	Silver flowering 2	9.410
	CRR073314	Silver flowering 3	13.269
	CRR073315	Gold flowering 1	4.018
	CRR073316	Gold flowering 2	6.477
	CRR073317	Gold flowering 3	3.624
	CRR073318	Tawny withering 1	25.256
	CRR073319	Tawny withering 2	22.549
	CRR073320	Tawny withering 3	29.816