Gene detail

Detail information of GWHGAAZE002445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010042729.1	6.7245E-135	PREDICTED: exopolygalacturonase-like [Eucalyptus grandis]
COG	YP_003391696.1	3E-14	glycoside hydrolase family 28
Swissprot	tr\|Q05967\|PGLR_TOBAC	9E-130	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZZK4\|A0A058ZZK4_EUCGR	4E-135	Uncharacterized protein {ECO:0000313\|EMBL:KCW46861.1}
TAIR10	AT3G14040.1	1E-90	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78916585	78918908	-
GWHAAZE00000001	mRNA	78916585	78918908	-
GWHAAZE00000001	exon	78916585	78917253	-
GWHAAZE00000001	exon	78918648	78918908	-
GWHAAZE00000001	CDS	78918648	78918908	-
GWHAAZE00000001	CDS	78916585	78917253	-

Transcript Sequence
>GWHTAAZE002449 ATGAATGCATGGAAAGAGGCATGTGCAGCACCAACTCCGAGTACAATTGTGATCCCAAAAGGAACATTTTTGTTGAATCAAGTGACAATTGAAGGACCTTGCAAAGCTCCTATAACCCTTAGATTGGAGGCTATCTTAAAAGCGCCCGCCGACCCAGCCCAATTCACAATGATTGGTGGTGGCACCTTTGATGGACAAGGAAAAACTGCTTGGGCCAACAATGATTGCAAGGCAACTGGAAAATGCAATAAACTTCCTAATAACATAAGTTTTGTACACTTTACCATCACTGCCCCTGGGGACAGCCTCAACACAGATGGAATCCACATCAGTCGCTCAATCGGTGTCAAGATCACGGAATCTGATATAAAGACGGGCAAAGATTGTGTGTCTATCGGTGATGGCAGCCAACAGGTTACTGTCGAGAAAGTAACTTGTGGGCCTGGCCATGGGATCGCTGTGGGGAGCCTTGTCAAGTACCCTAAGGAGGAACCAGTGGTTGGAATCTTTGTTAGGAACTGCACCATCACTGGAACAGATAATGGTGTAAGAGTTAAAACGTGGCCAGCTTTTGAACCTGGCGAGGCTTCTGATATTCACTTTGAGGATATTATCATGAATAATGTGAGCAATCCTGTCCTTATTGATCAAGAGTATTGTCTTAGCGGTCAGTGCACAAAACAAATACCTTCAAAAGTGAAGATTAGCAAAGTTAGCTTTAAGAACATAAGGGGGACATCTGCGACGCAACTTGCTGTGAAAATTGTTTGCAGTCAAGGAATACCTTGCGATGTTGTGGATGTTGCAGATATTAACCTCACGTACAACGGAAAGGAAGGTCCCTCCATAAGCCAGTGTGCCAACGTTAAGCCAATTTTTACCGGCATAATGAATCCTCCTGCGCGTGCCGCCCCTGCTCAACCTGCTTAA

Network for GWHGAAZE002445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	87	290	3.70E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	3.165
	SRR3591711	White flower	0.010
	SRR3591712	Green floral bud	7.230
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.110
	SRR8316896	Juvenile bud stage	0.716
	SRR8316897	Juvenile bud stage	0.793
	SRR8316894	Third green stage	0.492
	SRR8316900	Third green stage	3.905
	SRR8316901	Third green stage	4.903
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.152
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.907
	SRR6706287	Light intensity 50%	2.537
	SRR6706288	Light intensity 20%	1.504
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.723
	CNS0095593	Slightly white alabastrum(diploid) 2	2.771
	CNS0095594	Slightly white alabastrum(diploid) 3	4.111
	CNS0095595	Whole white alabastrum(diploid) 2	5.685
	CNS0095596	Whole white alabastrum(diploid) 3	10.304
	CNS0095597	Whole white alabastrum(diploid) 4	7.895
	CNS0095598	Silvery flower (diploied) 1	0.309
	CNS0095599	Silvery flower (diploied) 2	0.184
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.055
	CNS0095602	Golden flower (diploid) 2	0.133
	CNS0095603	Golden flower (diploid) 3	0.005
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.571
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.909
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.594
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.783
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.201
	CNS0095612	Silvery flower (tetraploid) 3	0.195
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	0.611
	CRR073298	Stem 2	0.816
	CRR073299	Stem 3	0.337
	CRR073300	Leaf 1	3.649
	CRR073301	Leaf 2	4.167
	CRR073302	Leaf 3	1.916
	CRR073303	Juvenile bud 1	1.389
	CRR073304	Juvenile bud 2	1.912
	CRR073305	Juvenile bud 3	0.028
	CRR073306	Third green 1	0.803
	CRR073307	Third green 2	0.720
	CRR073308	Third green 3	1.734
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.052
	CRR073311	Second white 3	0.530
	CRR073312	Silver flowering 1	0.641
	CRR073313	Silver flowering 2	0.981
	CRR073314	Silver flowering 3	0.352
	CRR073315	Gold flowering 1	0.147
	CRR073316	Gold flowering 2	0.154
	CRR073317	Gold flowering 3	0.495
	CRR073318	Tawny withering 1	0.366
	CRR073319	Tawny withering 2	0.743
	CRR073320	Tawny withering 3	0.390