Gene detail

Detail information of GWHGAAZE002444

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601010.1	6.4888E-163	PREDICTED: polygalacturonase-like [Nicotiana tomentosiformis]
COG	YP_001820212.1	4E-24	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|Q05967\|PGLR_TOBAC	6E-156	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	4E-159	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G14040.1	8E-111	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78875986	78877184	-
GWHAAZE00000001	mRNA	78875986	78877184	-
GWHAAZE00000001	exon	78875986	78876747	-
GWHAAZE00000001	exon	78876876	78877184	-
GWHAAZE00000001	CDS	78876876	78877184	-
GWHAAZE00000001	CDS	78875986	78876747	-

Transcript Sequence
>GWHTAAZE002448 TCTTCTGACTGCTTGGAAAGAGGCATGTGCATCACCAACTCCAAGTACAATAGTGATCCCAAAAGGCACATTTTGTTGAATCAAGTGTCAATTGAAGGTCCTTGCAAGGCTCCAATAACCCTTAGATTAGAGGCAATATTAAAGGCGCCCGCTGACCCAGCCCAATTAAAGCCGGATCTAGAATGGGTCTGCTTTAGAAACATTGACCAATTCACAATGATTGGTGGTGGCACCTTTGATGGACAAGGAAAAATTGCTTGGGCCAACAATGATTGCAAGGCAACCGGAAAATGCAATAAACTTCCTAATAATCTCAGCTTGAACTTCCTCACCAATACGGTGATCCAAGAGATAACTTCTCTTGATAGTAAGTTGTTTCATGTCAATGTGCTCGGATGCAAGAACATAAGTTTTATGCGCTTTACCATCACCGCCCCCGAGGATAGCCTTAACACGGATGGAATCCACATCGGACGCTCAACCGGTGTCAAGATCATGGAATCTGATATAAAGACGGGTGATGATTGTGTGTCTATTGGTGATGGCAGCCAACAGGTTACTATCGAGAAAGTAACTTGTGGACCTGGTCATGGGATCGCCGTGGGAAGCCTTGGCAAGTACCCTAAGGAGGAACCCGTGGTTGGAATCTTTGTTAGGAATTGCACCATCACTGGAACAGATAATGGTGTAAGAGTTAAGACGTGGCCGGCTTCTGAACCTGGGGAGGCTTCTGATATTCACTTTGAGGATATTATCATGAATAATGTGAGCAATCCCGTCCTTATTGATCAAGAGTATTGTCCTAGTGGTCAATGTACAAAACAGATACCTTCAAAAGTGAAGATTAGCAAAGTTAGCTTTAAGAACATAAGGGGGACATCAGGGACGCAACTTGCTGTGAAAATTGTTTGCAGTCAGGGCATACCATGTGACGGTGTGGAAGTTGCAGATATTGACCTCACGTATAGTGGAAAGGAAGGCCCAGCCACAAGCTTATGTGCCAACGTTAAGCCAACTTTCATTGGTAAAATAAATCCTCCCGCGTGTGCCGCACCTGCTCAACCTGCATAA

Network for GWHGAAZE002444

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	20	337	3.20E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.585
	SRR3591706	second leaf	0.041
	SRR3591707	mature leaf	0.208
	SRR3591708	Shoot apex	0.353
	SRR3591709	Stem	3.624
	SRR3591710	White floral bud	314.894
	SRR3591711	White flower	13.249
	SRR3591712	Green floral bud	567.806
	SRR3591713	Yellow flower	6.942
SRP173429	SRR8316895	Juvenile bud stage	6.461
	SRR8316896	Juvenile bud stage	97.186
	SRR8316897	Juvenile bud stage	74.651
	SRR8316894	Third green stage	52.385
	SRR8316900	Third green stage	357.736
	SRR8316901	Third green stage	365.285
	SRR8316898	Complete white stage	0.139
	SRR8316899	Complete white stage	3.203
	SRR8316903	Complete white stage	0.680
	SRR8316902	Silver flowering stage	5.559
	SRR8316904	Silver flowering stage	12.196
	SRR8316905	Silver flowering stage	3.033
	SRR8316906	Gold flowering stage	2.637
	SRR8316907	Gold flowering stage	0.354
	SRR8316908	Gold flowering stage	0.406
SRP132670	SRR6706286	Control	164.263
	SRR6706287	Light intensity 50%	157.171
	SRR6706288	Light intensity 20%	132.635
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	244.406
	CNS0095593	Slightly white alabastrum(diploid) 2	192.037
	CNS0095594	Slightly white alabastrum(diploid) 3	250.204
	CNS0095595	Whole white alabastrum(diploid) 2	547.692
	CNS0095596	Whole white alabastrum(diploid) 3	685.159
	CNS0095597	Whole white alabastrum(diploid) 4	585.108
	CNS0095598	Silvery flower (diploied) 1	19.165
	CNS0095599	Silvery flower (diploied) 2	79.143
	CNS0095600	Silvery flower (diploied) 3	18.353
	CNS0095601	Golden flower (diploid) 1	24.406
	CNS0095602	Golden flower (diploid) 2	15.667
	CNS0095603	Golden flower (diploid) 3	13.555
	CNS0095604	Slightly white alabastrum(tetraploid) 1	572.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	611.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	1013.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	1129.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	590.223
	CNS0095610	Silvery flower (tetraploid) 1	11.072
	CNS0095611	Silvery flower (tetraploid) 2	41.179
	CNS0095612	Silvery flower (tetraploid) 3	110.042
	CNS0095613	Golden flower (tetraploid) 1	23.339
	CNS0095614	Golden flower (tetraploid) 2	4.532
	CNS0095615	Golden flower (tetraploid) 3	62.381
CRA001975	CRR073297	Stem 1	55.363
	CRR073298	Stem 2	77.177
	CRR073299	Stem 3	48.043
	CRR073300	Leaf 1	271.149
	CRR073301	Leaf 2	233.434
	CRR073302	Leaf 3	162.050
	CRR073303	Juvenile bud 1	263.319
	CRR073304	Juvenile bud 2	276.969
	CRR073305	Juvenile bud 3	25.652
	CRR073306	Third green 1	170.058
	CRR073307	Third green 2	252.534
	CRR073308	Third green 3	171.788
	CRR073309	Second white 1	16.302
	CRR073310	Second white 2	30.098
	CRR073311	Second white 3	36.339
	CRR073312	Silver flowering 1	185.656
	CRR073313	Silver flowering 2	207.516
	CRR073314	Silver flowering 3	116.644
	CRR073315	Gold flowering 1	185.413
	CRR073316	Gold flowering 2	44.198
	CRR073317	Gold flowering 3	108.093
	CRR073318	Tawny withering 1	164.923
	CRR073319	Tawny withering 2	146.636
	CRR073320	Tawny withering 3	141.248