Detail information of GWHGAAZE002443


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004158053.13.18021E-09PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Cucumis sativus]
Swissprottr|Q05967|PGLR_TOBAC0.0000002Polygalacturonase (Precursor)
trEMBLtr|E3VSV7|E3VSV7_CUCPE0.000000004Polygalacturonase {ECO:0000313|EMBL:ADP09681.1}
TAIR10AT3G14040.10.00003Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7887552678875866-
GWHAAZE00000001mRNA7887552678875866-
GWHAAZE00000001exon7887552678875714-
GWHAAZE00000001exon7887584978875866-
GWHAAZE00000001CDS7887584978875866-
GWHAAZE00000001CDS7887552678875714-
Transcript Sequence

Network for GWHGAAZE002443

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01213E3.2.1.67 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.080
SRR3591710White floral bud7.231
SRR3591711White flower0.429
SRR3591712Green floral bud14.708
SRR3591713Yellow flower0.142
SRP173429 SRR8316895Juvenile bud stage 0.173
SRR8316896Juvenile bud stage 2.675
SRR8316897Juvenile bud stage 2.138
SRR8316894Third green stage 1.302
SRR8316900Third green stage 10.184
SRR8316901Third green stage 9.633
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.036
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.051
SRR8316904Silver flowering stage0.239
SRR8316905Silver flowering stage0.032
SRR8316906Gold flowering stage 0.070
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.255
SRR6706287Light intensity 50%3.279
SRR6706288Light intensity 20%3.001
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.038
CNS0095593Slightly white alabastrum(diploid) 214.067
CNS0095594Slightly white alabastrum(diploid) 321.549
CNS0095595Whole white alabastrum(diploid) 238.012
CNS0095596Whole white alabastrum(diploid) 338.896
CNS0095597Whole white alabastrum(diploid) 447.265
CNS0095598Silvery flower (diploied) 11.375
CNS0095599Silvery flower (diploied) 23.967
CNS0095600Silvery flower (diploied) 30.628
CNS0095601Golden flower (diploid) 10.566
CNS0095602Golden flower (diploid) 20.638
CNS0095603Golden flower (diploid) 30.542
CNS0095604Slightly white alabastrum(tetraploid) 126.572
CNS0095605Slightly white alabastrum(tetraploid) 230.032
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 147.630
CNS0095608Whole white alabastrum(tetraploid) 249.390
CNS0095609Whole white alabastrum(tetraploid) 325.500
CNS0095610Silvery flower (tetraploid) 10.252
CNS0095611Silvery flower (tetraploid) 22.422
CNS0095612Silvery flower (tetraploid) 33.747
CNS0095613Golden flower (tetraploid) 11.078
CNS0095614Golden flower (tetraploid) 20.176
CNS0095615Golden flower (tetraploid) 32.302
CRA001975CRR073297Stem 10.411
CRR073298Stem 20.463
CRR073299Stem 30.283
CRR073300Leaf 12.622
CRR073301Leaf 21.365
CRR073302Leaf 31.390
CRR073303Juvenile bud 11.974
CRR073304Juvenile bud 21.292
CRR073305Juvenile bud 30.359
CRR073306Third green 11.425
CRR073307Third green 21.789
CRR073308Third green 30.641
CRR073309Second white 10.299
CRR073310Second white 20.236
CRR073311Second white 30.371
CRR073312Silver flowering 12.589
CRR073313Silver flowering 22.180
CRR073314Silver flowering 31.620
CRR073315Gold flowering 13.510
CRR073316Gold flowering 20.766
CRR073317Gold flowering 32.100
CRR073318Tawny withering 11.945
CRR073319Tawny withering 21.527
CRR073320Tawny withering 33.767