Gene detail

Detail information of GWHGAAZE002402

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGY61467.1	8.29557E-29	pyrophosphate-fructose-6-phosphate-phosphotransferase beta1, partial [Rorippa amphibia]
COG	YP_004652174.1	2E-20	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta
Swissprot	tr\|Q8W4M5\|PFPB1_ARATH	6E-31	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 {ECO:0000255\|HAMAP-Rule:MF_03185}
trEMBL	tr\|U5QQV6\|U5QQV6_RORAM	3E-29	Pyrophosphate-fructose-6-phosphate-phosphotransferase beta1 {ECO:0000313\|EMBL:AGY61467.1} (Fragment)
TAIR10	AT1G12000.1	2E-27	Phosphofructokinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	77978598	77984194	-
GWHAAZE00000001	mRNA	77978598	77984194	-
GWHAAZE00000001	exon	77984042	77984194	-
GWHAAZE00000001	exon	77983447	77983499	-
GWHAAZE00000001	exon	77978933	77979017	-
GWHAAZE00000001	exon	77978598	77978786	-
GWHAAZE00000001	CDS	77984042	77984194	-
GWHAAZE00000001	CDS	77983447	77983499	-
GWHAAZE00000001	CDS	77978933	77979017	-
GWHAAZE00000001	CDS	77978598	77978786	-

Transcript Sequence
>GWHTAAZE002406 AATAACAATGCAAATGAGATTGCAAAGCTTTTCCCCAATTTATTTGGGCACCACTTGGCAAATCTTGTGCCTAACAATGCAGGGGTGACACCAAGTCAGGGTTTGAAGATTGGGGTTGTGCTTTCAAGAGGACAAGCCACCGGTGGACACAATGGAGGTTTTGATATGATATGTAGTGGCAGGGATAAGATTGAAACCCCGAACAGTTGTAAGGCTTATGGGCTCAGTTTCTCACATAACATTGAGTGCGCTTTACAGACTCATCCAAACATCACAATTATAAGAGAAGAAGTTGCTACTCAGAAGCAAACATTGAAGAATGTTATAGATTATATGACAAACATAATCTGTAAACGCAAAAAAATTGGTTATAATTATGGTGTTATACTTATACCCGAAAGCCTAATTGATTTCATTCCAGAAGTATGTAATTTATATCCTAATTGTAACATTTTTTCTACATTGCCCTCGTTCTTCTGA

Network for GWHGAAZE002402

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00895	pfp, PFP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0003872	molecular_function	6-phosphofructokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.220
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.139
	SRR8316896	Juvenile bud stage	0.252
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.041
	SRR8316900	Third green stage	0.139
	SRR8316901	Third green stage	0.351
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.077
	SRR6706287	Light intensity 50%	0.083
	SRR6706288	Light intensity 20%	0.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.636
	CNS0095593	Slightly white alabastrum(diploid) 2	0.762
	CNS0095594	Slightly white alabastrum(diploid) 3	2.486
	CNS0095595	Whole white alabastrum(diploid) 2	0.467
	CNS0095596	Whole white alabastrum(diploid) 3	0.527
	CNS0095597	Whole white alabastrum(diploid) 4	0.066
	CNS0095598	Silvery flower (diploied) 1	0.066
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.344
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.821
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.330
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.637
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.251
	CRR073298	Stem 2	0.640
	CRR073299	Stem 3	0.172
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.067
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.013
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000