Detail information of GWHGAAZE002325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010323813.16.601E-121PREDICTED: syntaxin-132 isoform X1 [Solanum lycopersicum]
Swissprottr|Q8VZU2|SY132_ARATH8E-96Syntaxin-132
trEMBLtr|M1CE57|M1CE57_SOLTU5E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400065520}
TAIR10AT5G08080.12E-77syntaxin of plants 132

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7578112775783841-
GWHAAZE00000001mRNA7578112775783841-
GWHAAZE00000001exon7578112775781300-
GWHAAZE00000001exon7578142375781488-
GWHAAZE00000001exon7578213675782216-
GWHAAZE00000001exon7578264775782724-
GWHAAZE00000001exon7578283775782862-
GWHAAZE00000001exon7578300675783066-
GWHAAZE00000001exon7578321675783279-
GWHAAZE00000001exon7578353775783610-
GWHAAZE00000001exon7578371975783841-
GWHAAZE00000001CDS7578371975783841-
GWHAAZE00000001CDS7578353775783610-
GWHAAZE00000001CDS7578321675783279-
GWHAAZE00000001CDS7578300675783066-
GWHAAZE00000001CDS7578283775782862-
GWHAAZE00000001CDS7578264775782724-
GWHAAZE00000001CDS7578213675782216-
GWHAAZE00000001CDS7578142375781488-
GWHAAZE00000001CDS7578112775781300-
Transcript Sequence

Network for GWHGAAZE002325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00804.26Syntaxin111823.80E-49
PF05739.20SNARE1842351.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08486STX1B_2_3 SNARE interactions in vesicular transport map04130
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0016192biological_processvesicle-mediated transport
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.774
SRR3591706second leaf18.363
SRR3591707mature leaf23.647
SRR3591708Shoot apex28.390
SRR3591709Stem43.937
SRR3591710White floral bud38.699
SRR3591711White flower52.756
SRR3591712Green floral bud23.237
SRR3591713Yellow flower53.613
SRP173429 SRR8316895Juvenile bud stage 20.398
SRR8316896Juvenile bud stage 27.866
SRR8316897Juvenile bud stage 12.425
SRR8316894Third green stage 9.445
SRR8316900Third green stage 28.781
SRR8316901Third green stage 27.333
SRR8316898Complete white stage 22.308
SRR8316899Complete white stage 49.997
SRR8316903Complete white stage 30.941
SRR8316902Silver flowering stage25.570
SRR8316904Silver flowering stage32.529
SRR8316905Silver flowering stage15.037
SRR8316906Gold flowering stage 53.050
SRR8316907Gold flowering stage 51.204
SRR8316908Gold flowering stage 58.336
SRP132670SRR6706286Control28.856
SRR6706287Light intensity 50%29.466
SRR6706288Light intensity 20%26.190
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.624
CNS0095593Slightly white alabastrum(diploid) 225.610
CNS0095594Slightly white alabastrum(diploid) 324.482
CNS0095595Whole white alabastrum(diploid) 220.418
CNS0095596Whole white alabastrum(diploid) 316.586
CNS0095597Whole white alabastrum(diploid) 417.728
CNS0095598Silvery flower (diploied) 133.129
CNS0095599Silvery flower (diploied) 230.669
CNS0095600Silvery flower (diploied) 341.013
CNS0095601Golden flower (diploid) 130.099
CNS0095602Golden flower (diploid) 239.882
CNS0095603Golden flower (diploid) 340.697
CNS0095604Slightly white alabastrum(tetraploid) 124.402
CNS0095605Slightly white alabastrum(tetraploid) 223.501
CNS0095606Slightly white alabastrum(tetraploid) 338.619
CNS0095607Whole white alabastrum(tetraploid) 119.621
CNS0095608Whole white alabastrum(tetraploid) 213.835
CNS0095609Whole white alabastrum(tetraploid) 328.957
CNS0095610Silvery flower (tetraploid) 160.637
CNS0095611Silvery flower (tetraploid) 253.082
CNS0095612Silvery flower (tetraploid) 355.978
CNS0095613Golden flower (tetraploid) 148.395
CNS0095614Golden flower (tetraploid) 250.547
CNS0095615Golden flower (tetraploid) 350.961
CRA001975CRR073297Stem 133.471
CRR073298Stem 229.157
CRR073299Stem 333.724
CRR073300Leaf 131.333
CRR073301Leaf 226.454
CRR073302Leaf 329.880
CRR073303Juvenile bud 140.266
CRR073304Juvenile bud 225.331
CRR073305Juvenile bud 335.416
CRR073306Third green 132.799
CRR073307Third green 240.249
CRR073308Third green 335.728
CRR073309Second white 126.709
CRR073310Second white 248.063
CRR073311Second white 338.810
CRR073312Silver flowering 132.155
CRR073313Silver flowering 228.259
CRR073314Silver flowering 331.360
CRR073315Gold flowering 120.330
CRR073316Gold flowering 225.086
CRR073317Gold flowering 316.445
CRR073318Tawny withering 151.821
CRR073319Tawny withering 249.925
CRR073320Tawny withering 351.394