Gene detail

Detail information of GWHGAAZE002239

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007217258.1	0	hypothetical protein PRUPE_ppa008822mg [Prunus persica]
COG	YP_005473566.1	2E-26	putative glutamate formiminotransferase
trEMBL	tr\|M5WXD0\|M5WXD0_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18457.1}
TAIR10	AT2G20830.1	6E-78	transferases;folic acid binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73489115	73492352	-
GWHAAZE00000001	mRNA	73489115	73492352	-
GWHAAZE00000001	exon	73492233	73492352	-
GWHAAZE00000001	exon	73490345	73490756	-
GWHAAZE00000001	exon	73489115	73489632	-
GWHAAZE00000001	five_prime_UTR	73492257	73492352	-
GWHAAZE00000001	CDS	73492233	73492256	-
GWHAAZE00000001	CDS	73490345	73490756	-
GWHAAZE00000001	CDS	73489115	73489632	-

Transcript Sequence
>GWHTAAZE002243 ACAATCTATATCCATATCTCTCTCTCCCCCCAGTTTTTTCAAGAAACAGAGGTAAATTAAGCAACAGAGTTGAAATAGACAAGGAGAAATTAAGCAATGGATCTCACCCCAAGTTCCAAGGACAAGAAGAAAACCCCCAAGCAGTCAATGCTACTCTGCTGCAAGCTCTACATATCTGAATCCCGGAACAAGGAAGCCCTGGATGCAATCGAACGTGCAGCCAAACACGACCCAGAAACTGTAACGGTCAACAAGTTTGAGGACCGAGCCTACAATCGGGTGAGGTATACACTCGTTTCCTATGTGGCTCAAGATAGCACGGGGTGCCCCATTTACAGCCCGTTGCATCAAACCGTTGTTGCTATGGCTGAAGCTGCTTACGCGGCTATTGACCTTGAGCTGCACTCGGGGGCTCACCCTCGGCTTGGGGTAGTGGACGACATTGTATTTCATCCACTGGCTCGGGCTCGGCTTGAAGAAGCAGCTTGGCTCGCTAAGACTGTGGCAGCTGATATTGGTAACCGCTTTCAAGTACCAGTATTTCTCTATGCTGCAGCACACCCAACAGGCAAGGCCTTGGACACCATAAGGCGTGAGTTGGGCTATTACAGGCCCAACTTCATGGGCAACCAATGGGCCGGGTGGGACCAGCCCGAAACCCTAGCCGAAAAGCCCGATGAAGGCCCCACCTCTGTAACCCGAGCCCGAGGCATAGCTATGATAGGGGCCCGTCCGTGGGTCGCCACATACAACGTGCCCATCATGTCCACTGACGTCTCGGCGACCCGCCGGATCGCACAGATGGTGAGCGGGCGGGGCGGTGGGTTGCCCACAGTCCAAACCTTGGGCCTGGTTCATGGCGAGGATTCGACCGAGATAGCTTGTATGTTGTTGGAGCCCAATAGAGTTGGGGCGGACCGGGTCCAGAACCGGGTCCAGATGCTGGCAGCCCAAGAAGGGCTGGATGTGGAAAATGGGTATTTTACTGATTTTTCGCCAGAGATGATTGTTGAGAGATATTATAAGCTAATCTCTGCTGAATCTGACTAA

Network for GWHGAAZE002239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07837.13	FTCD_N	19	212	7.50E-53
PF07992.15	Pyr_redox_2	7	320	4.80E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08232	E1.6.5.4	Metabolic pathways	map01100
K08232	E1.6.5.4	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0005542	molecular_function	folic acid binding
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.531
	SRR3591706	second leaf	55.729
	SRR3591707	mature leaf	29.322
	SRR3591708	Shoot apex	90.476
	SRR3591709	Stem	16.378
	SRR3591710	White floral bud	41.491
	SRR3591711	White flower	73.480
	SRR3591712	Green floral bud	12.830
	SRR3591713	Yellow flower	11.350
SRP173429	SRR8316895	Juvenile bud stage	30.609
	SRR8316896	Juvenile bud stage	19.718
	SRR8316897	Juvenile bud stage	11.962
	SRR8316894	Third green stage	7.939
	SRR8316900	Third green stage	14.292
	SRR8316901	Third green stage	13.129
	SRR8316898	Complete white stage	22.661
	SRR8316899	Complete white stage	12.970
	SRR8316903	Complete white stage	35.806
	SRR8316902	Silver flowering stage	38.332
	SRR8316904	Silver flowering stage	49.777
	SRR8316905	Silver flowering stage	2.336
	SRR8316906	Gold flowering stage	5.641
	SRR8316907	Gold flowering stage	29.914
	SRR8316908	Gold flowering stage	9.225
SRP132670	SRR6706286	Control	31.269
	SRR6706287	Light intensity 50%	26.228
	SRR6706288	Light intensity 20%	20.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.986
	CNS0095593	Slightly white alabastrum(diploid) 2	21.725
	CNS0095594	Slightly white alabastrum(diploid) 3	25.436
	CNS0095595	Whole white alabastrum(diploid) 2	15.453
	CNS0095596	Whole white alabastrum(diploid) 3	17.515
	CNS0095597	Whole white alabastrum(diploid) 4	15.789
	CNS0095598	Silvery flower (diploied) 1	40.947
	CNS0095599	Silvery flower (diploied) 2	28.010
	CNS0095600	Silvery flower (diploied) 3	48.626
	CNS0095601	Golden flower (diploid) 1	39.418
	CNS0095602	Golden flower (diploid) 2	45.436
	CNS0095603	Golden flower (diploid) 3	48.133
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.704
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.463
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.768
	CNS0095610	Silvery flower (tetraploid) 1	62.342
	CNS0095611	Silvery flower (tetraploid) 2	32.844
	CNS0095612	Silvery flower (tetraploid) 3	13.463
	CNS0095613	Golden flower (tetraploid) 1	19.439
	CNS0095614	Golden flower (tetraploid) 2	28.296
	CNS0095615	Golden flower (tetraploid) 3	321.222
CRA001975	CRR073297	Stem 1	46.411
	CRR073298	Stem 2	31.164
	CRR073299	Stem 3	73.270
	CRR073300	Leaf 1	13.261
	CRR073301	Leaf 2	10.139
	CRR073302	Leaf 3	12.899
	CRR073303	Juvenile bud 1	5.665
	CRR073304	Juvenile bud 2	9.081
	CRR073305	Juvenile bud 3	9.911
	CRR073306	Third green 1	8.154
	CRR073307	Third green 2	23.329
	CRR073308	Third green 3	35.689
	CRR073309	Second white 1	3.090
	CRR073310	Second white 2	3.025
	CRR073311	Second white 3	3.316
	CRR073312	Silver flowering 1	3.905
	CRR073313	Silver flowering 2	5.830
	CRR073314	Silver flowering 3	5.904
	CRR073315	Gold flowering 1	13.112
	CRR073316	Gold flowering 2	10.827
	CRR073317	Gold flowering 3	17.338
	CRR073318	Tawny withering 1	10.744
	CRR073319	Tawny withering 2	6.192
	CRR073320	Tawny withering 3	9.403