Gene detail

Detail information of GWHGAAZE002231

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009767606.1	0	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 [Nicotiana sylvestris]
COG	YP_004787307.1	4E-23	hypothetical protein
Swissprot	tr\|Q6R2K3\|SRF3_ARATH	0	Protein STRUBBELIG-RECEPTOR FAMILY 3 (Precursor)
trEMBL	tr\|M1ADB2\|M1ADB2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020334}
TAIR10	AT4G03390.1	2E-116	STRUBBELIG-receptor family 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73410858	73421942	+
GWHAAZE00000001	mRNA	73410858	73421942	+
GWHAAZE00000001	exon	73410858	73410969	+
GWHAAZE00000001	exon	73411469	73411598	+
GWHAAZE00000001	exon	73411697	73411768	+
GWHAAZE00000001	exon	73412361	73412426	+
GWHAAZE00000001	exon	73412745	73412816	+
GWHAAZE00000001	exon	73412899	73412970	+
GWHAAZE00000001	exon	73413066	73413137	+
GWHAAZE00000001	exon	73413216	73413284	+
GWHAAZE00000001	exon	73413391	73413456	+
GWHAAZE00000001	exon	73414617	73414744	+
GWHAAZE00000001	exon	73414904	73415053	+
GWHAAZE00000001	exon	73415594	73415707	+
GWHAAZE00000001	exon	73415873	73416039	+
GWHAAZE00000001	exon	73417029	73417300	+
GWHAAZE00000001	exon	73417962	73418010	+
GWHAAZE00000001	exon	73419654	73419790	+
GWHAAZE00000001	exon	73419875	73420031	+
GWHAAZE00000001	exon	73421847	73421942	+
GWHAAZE00000001	CDS	73410858	73410969	+
GWHAAZE00000001	CDS	73411469	73411598	+
GWHAAZE00000001	CDS	73411697	73411768	+
GWHAAZE00000001	CDS	73412361	73412426	+
GWHAAZE00000001	CDS	73412745	73412816	+
GWHAAZE00000001	CDS	73412899	73412970	+
GWHAAZE00000001	CDS	73413066	73413137	+
GWHAAZE00000001	CDS	73413216	73413284	+
GWHAAZE00000001	CDS	73413391	73413456	+
GWHAAZE00000001	CDS	73414617	73414744	+
GWHAAZE00000001	CDS	73414904	73415053	+
GWHAAZE00000001	CDS	73415594	73415707	+
GWHAAZE00000001	CDS	73415873	73416039	+
GWHAAZE00000001	CDS	73417029	73417300	+
GWHAAZE00000001	CDS	73417962	73418010	+
GWHAAZE00000001	CDS	73419654	73419790	+
GWHAAZE00000001	CDS	73419875	73420031	+
GWHAAZE00000001	CDS	73421847	73421942	+

Transcript Sequence
>GWHTAAZE002235 ATGGAAAGGAAGAGATCTGCTCTGAATTGGGGGGTTTCAGCCCAGGTCTTCTTTTGCTTTATCCTGATTTACGTGGCTCGAGTTTCACATGGAGACACTAATCCGGTTGATGTTACTGCAATCAATAACTTCTATGCTGCACTGGAATCTCCTTTTCTTCCTGGATGGGTTCCTGTTGGTGGAGACCCATGTGGTGATAATTGGCAAGGTGTAATATGCGTAGATACAAATATAATCTCAATAACCCTTAATGGTGCTAATTTGGGAGGAGAATTGGGCGATAACTTGGGGTCATTTTCTTCTATCACAAGAATAGATTTGAGCAACAACCGCATTGGGGGGAATATTCCGACCAATCTTCCAGTTACCATGGTGGATCTTTTTCTTTCAGATAACAAGTTCAGTGGAAGCATCCCCAGTTCTTTATCTTCTGTAACTCAGCTTTCGGCTATGTCTCTAAACAACAACCAGTTAACAGGGGAAATACCTGATGCATTTCAAGGCCTTACACAATTGAGCAATCTAGATGTCTCTAGTAACAATTTGAGTGGGCAACTACCAGTCTCGCTAGAAAGTTTGTCATCTCTAGCTACCCTACGTTTGCAGAATAATCAGCTTTCTGGGACCCTTGATGTTCTACAAGATCTTCCTAATCTCCATGATTTGAATATAGAGAATAACCAGTTCTCGGGACCTATACCAGAGAAGTTATTAAACATGCCCAATTTTAGGAAAGATGGGAATCCATTTAATACGAGTACTGCCCCTTTACCTCCGCCTACAAACTCAACACCGCCCACAAACTCAACACCACGGGCACCCGGACCACCATTTTGGGCACCTACTGGGCAAACACCTGGACTCTTGTTCTTCATACCAAGGTGCTGCAGTGGAAGTCAGGAGGTGGCACAAATTCCGAAACGGCATGACGTAGCTCCATACGAAGGCAGGAGAGAGAATCCTAGAGATAATGGATCCTTGGTGCAACAAATTAATCAAATAGAGAAGGTTCAAAAAGTGTCTGCTGTGAGGCCAAAGGAAGAGCAGAATCAAACAGAACCTAGAAGAATGGGTTTGATACCCAAGCCACGGCACAAGAAGGAGCTAAATGTGCAAGCAATGGCCGAAGACAATCTGGAGAAGCCGTCCACCCATCTCGTTCCTCCAACTTCAGTGAAGTCGTACACGATTGCATCTCTTCAGCAATATACAAATAGCTTTTCTCAAGAAAATCTTATTGGTTCAGGAACGTTGGGAAGTGTTTATAGAGCACAACTTCCTGATAGAAAGTTACTCGCTGTCAAGAAGCTGGAGAAAAGTGTCTCCCGTAAACAGAAAGATGCTGAGTTTCTAAATCTGGTAAACAGCCTTGATAAAATTCGGCATGCAAATGTTGTTGAGTTGATGGGTTACTGTGCAGAGCACAGTCAAAGGCTTCTTATTTATGAGTACTGCAGTAACGGGACACTGCTGGATGCACTACACTCTGATGATGAATTTAAGAAGAAACTTTCATGGAATACCCGTACAAGGATGGCACTTGGGGCTGCAAGAGCTTTAGAGGGTTACAGATTGGGGAGGGCAATCCTCTGGCAGAAATTGGGCTCAGAGCTGTCAGGACATATCCTATCGACCTATGGTTACGGGGCCCCAGAATTCGAGTCTGGAATATATACTTCCATGAGTGATGTGTACAGTTTTGGAGTGGTTATGTTGGAACTCTTAACGGGTAGAAAGTCACATGACAGCACACGGAATCGAGGGGAGCAGTTTCTGGTAAGATGGGCAATGCCTCGGCTTCATGATATTGATGCATTGTCAAGGATGGTTGACCCTTCTCTCGATGGAGAATACCCTGTCAAATCATTATCAAATTTTGCAGACATTATTTCCCGGTGTGTTCAGGCTGAGCCAGAATTTAGGCCACAAATGTCTGAAGTTGTTCAGGACCTACAACAAATGATAAGGAGAGAGTCGTCTAAAAGACAAGTTGGGGACTGA

Network for GWHGAAZE002231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	37	73	0.00016
PF13855.7	LRR_8	127	182	1.20E-07
PF07714.18	PK_Tyr_Ser-Thr	410	521	3.20E-16
PF07714.18	PK_Tyr_Ser-Thr	548	651	1.70E-09
PF11265.9	Med25_VWA	9	118	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.195
	SRR3591706	second leaf	8.847
	SRR3591707	mature leaf	2.865
	SRR3591708	Shoot apex	18.967
	SRR3591709	Stem	23.334
	SRR3591710	White floral bud	25.121
	SRR3591711	White flower	18.077
	SRR3591712	Green floral bud	23.437
	SRR3591713	Yellow flower	49.458
SRP173429	SRR8316895	Juvenile bud stage	12.930
	SRR8316896	Juvenile bud stage	16.061
	SRR8316897	Juvenile bud stage	9.711
	SRR8316894	Third green stage	8.526
	SRR8316900	Third green stage	18.592
	SRR8316901	Third green stage	18.536
	SRR8316898	Complete white stage	12.178
	SRR8316899	Complete white stage	28.894
	SRR8316903	Complete white stage	36.690
	SRR8316902	Silver flowering stage	8.924
	SRR8316904	Silver flowering stage	18.210
	SRR8316905	Silver flowering stage	6.686
	SRR8316906	Gold flowering stage	28.671
	SRR8316907	Gold flowering stage	25.926
	SRR8316908	Gold flowering stage	22.914
SRP132670	SRR6706286	Control	17.594
	SRR6706287	Light intensity 50%	16.435
	SRR6706288	Light intensity 20%	16.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.071
	CNS0095593	Slightly white alabastrum(diploid) 2	10.943
	CNS0095594	Slightly white alabastrum(diploid) 3	10.159
	CNS0095595	Whole white alabastrum(diploid) 2	9.536
	CNS0095596	Whole white alabastrum(diploid) 3	9.777
	CNS0095597	Whole white alabastrum(diploid) 4	7.210
	CNS0095598	Silvery flower (diploied) 1	16.301
	CNS0095599	Silvery flower (diploied) 2	11.604
	CNS0095600	Silvery flower (diploied) 3	34.986
	CNS0095601	Golden flower (diploid) 1	12.007
	CNS0095602	Golden flower (diploid) 2	45.162
	CNS0095603	Golden flower (diploid) 3	42.776
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.395
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.040
	CNS0095610	Silvery flower (tetraploid) 1	21.948
	CNS0095611	Silvery flower (tetraploid) 2	28.880
	CNS0095612	Silvery flower (tetraploid) 3	13.952
	CNS0095613	Golden flower (tetraploid) 1	14.007
	CNS0095614	Golden flower (tetraploid) 2	11.482
	CNS0095615	Golden flower (tetraploid) 3	58.498
CRA001975	CRR073297	Stem 1	19.486
	CRR073298	Stem 2	17.644
	CRR073299	Stem 3	9.699
	CRR073300	Leaf 1	26.775
	CRR073301	Leaf 2	22.000
	CRR073302	Leaf 3	11.668
	CRR073303	Juvenile bud 1	15.864
	CRR073304	Juvenile bud 2	15.578
	CRR073305	Juvenile bud 3	27.491
	CRR073306	Third green 1	2.265
	CRR073307	Third green 2	5.826
	CRR073308	Third green 3	7.858
	CRR073309	Second white 1	2.105
	CRR073310	Second white 2	2.466
	CRR073311	Second white 3	1.741
	CRR073312	Silver flowering 1	3.684
	CRR073313	Silver flowering 2	4.729
	CRR073314	Silver flowering 3	4.781
	CRR073315	Gold flowering 1	3.453
	CRR073316	Gold flowering 2	6.677
	CRR073317	Gold flowering 3	4.301
	CRR073318	Tawny withering 1	9.075
	CRR073319	Tawny withering 2	6.730
	CRR073320	Tawny withering 3	10.602