Gene detail

Detail information of GWHGAAZE002203

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263849.1	0	PREDICTED: probable polyol transporter 4 [Vitis vinifera]
COG	YP_134468.1	3E-96	metabolite transport protein
Swissprot	tr\|Q0WUU6\|PLT4_ARATH	0	Probable polyol transporter 4
trEMBL	tr\|E3VWW3\|E3VWW3_VITVI	0	Putative polyol/monosaccharide transporter {ECO:0000313\|EMBL:ADP37153.1}
TAIR10	AT2G20780.1	0	Major facilitator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72714687	72717617	-
GWHAAZE00000001	mRNA	72714687	72717617	-
GWHAAZE00000001	exon	72714687	72716062	-
GWHAAZE00000001	exon	72717377	72717617	-
GWHAAZE00000001	CDS	72717377	72717617	-
GWHAAZE00000001	CDS	72714687	72716062	-

Transcript Sequence
>GWHTAAZE002207 ATGGGGTTGATGGGTCTCCAAGAAAATGAAAACGGGGAATTGGGTTTGTCTGCTGTTTCATTGGGGAGTAAGAATAAGTACAGGAGGATGGATTCTGAGTTGACTGAATATGGTGAAGATGGTGATGAAAATGAAGCTTCACACCATCACCATTTGCAGAAGATGAGGAGCAAGAGGACTAGTAAATACGTTTTTGCTTGTGCTGTTTTTGCATCTCTTAATTCCGTTCTTCTTGGCTATGATGTCGGTGTTATGAGTGGAGCAATCATATTCATTCAAGAAGATCTCAAGATAACCGAAGTACAAGAAGAAGTCCTTGTAGGTTGTTTGAGCGTCGTTTCCCTTTTCGGTAGTTTAGCTGGAGGTCGAGCCTCAGACGCCCTTGGCCGAAAATGGACCATGGGTCTAGCCGCTATAATCTTCCAAGCTGGTGCAGCCATAATGACCCTAGCCCCATCCTTCCAAATCCTAATGCTTGGTAGATTATTTGCCGGGATTGGAATTGGATTCGGCGTAATGATCGCACCAGTCTACATAGCCGAGATCTCACCTACCATAGCCCGAGGCTCATTCACCTCGTTCCCAGAGATATTCATAAACCTCGGTATCTTACTAGGCTATGTATCTAATTATGCATTTTCTGGTTTTTCACCGCACACAAATTGGAGAATAATGTTAGCTGTTGGGATCTTACCGTCAGTCTTTATAGCCGCTGCTTTATTTATAATCCCCGAATCGCCACGGTGGCTTGTTATGCAAAACCGTCACGAAGAAGCGAAAGCTGTTCTAATGAAAACAAATGAAACCGACTCTGAGGTGGAGGAGAGACTGGCAGAGATCCAACAAGCTGCAACCGGAAGTGGTGGAATCACCACCGAGGGGGAGAAATATGAGGAAAAAGCTGTTTGGCGAGAGCTTTTGAGCCCATCACCCGCTCTAAGGAGAATGTTAGTGACCGGATTCGGAATCCAATGCTTCCAACAAATCACGGGCATTGATGCAACGGTTTACTACAGCCCTGAGATCCTGAAATCGGCCGGGATCGAAGATAATACCCAGCTTCTTGCAGCTACGGTTGCTGTTGGAGTTGCAAAAACAGTTTTTATACTAGTTGCCATTTTGCTTATTGACAAAGTTGGAAGGAAGCCATTGCTATATGTTAGCACAATTGGGATGACCATTTGCTTATTGACTTTAGCCCTTAGCTTATCTTTGCTAAATGGTCCACTTGGAATCGGTTTGGCCTTGCTTTCAGTTTGTGGCAATGTGGCATTTTTCTCAGTCGGGATCGGACCGGTTTGTTGGGTCATAACGTCCGAGATTTTCCCTTTAAGACTAAGAGCTCAAGCATCGGCGCTTGGGGCAGTGGGGAATAGAGTTTGTAGTGGTTTAATCGCCATGTCTTTTCTTTCAGTTTCGAGGGCAATAACGGTGAGCGGTACGTTCTTTATATTCTCATTTATATCAGCTCTTTCTGTGGCTTTTGTTTACATTTTTGTACCCGAGACGAAAGGGAAGTCTTTGGAGCAAATCGAGCTCTTGTTTCAAAGCGAACACGGGTGGGGTGAAGGGGAAGTCGAGCTCGGAGATGTTGAGCATTTAGTGCAAAAAGCATGA

Network for GWHGAAZE002203

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00083.25	Sugar_tr	68	515	1.50E-109
PF05577.13	Peptidase_S28	55	112	7.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01285	PRCP	Renin-angiotensin system	map04614
K01285	PRCP	Protein digestion and absorption	map04974

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0022857	molecular_function	transmembrane transporter activity
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.513
	SRR3591706	second leaf	20.447
	SRR3591707	mature leaf	19.850
	SRR3591708	Shoot apex	18.077
	SRR3591709	Stem	32.644
	SRR3591710	White floral bud	11.338
	SRR3591711	White flower	11.742
	SRR3591712	Green floral bud	20.955
	SRR3591713	Yellow flower	9.865
SRP173429	SRR8316895	Juvenile bud stage	25.179
	SRR8316896	Juvenile bud stage	17.377
	SRR8316897	Juvenile bud stage	14.261
	SRR8316894	Third green stage	9.298
	SRR8316900	Third green stage	25.054
	SRR8316901	Third green stage	23.272
	SRR8316898	Complete white stage	2.262
	SRR8316899	Complete white stage	41.513
	SRR8316903	Complete white stage	3.868
	SRR8316902	Silver flowering stage	1.679
	SRR8316904	Silver flowering stage	2.293
	SRR8316905	Silver flowering stage	1.312
	SRR8316906	Gold flowering stage	6.873
	SRR8316907	Gold flowering stage	4.082
	SRR8316908	Gold flowering stage	11.688
SRP132670	SRR6706286	Control	27.191
	SRR6706287	Light intensity 50%	27.726
	SRR6706288	Light intensity 20%	28.458
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.414
	CNS0095593	Slightly white alabastrum(diploid) 2	11.287
	CNS0095594	Slightly white alabastrum(diploid) 3	9.001
	CNS0095595	Whole white alabastrum(diploid) 2	10.689
	CNS0095596	Whole white alabastrum(diploid) 3	6.839
	CNS0095597	Whole white alabastrum(diploid) 4	9.319
	CNS0095598	Silvery flower (diploied) 1	16.824
	CNS0095599	Silvery flower (diploied) 2	19.388
	CNS0095600	Silvery flower (diploied) 3	11.838
	CNS0095601	Golden flower (diploid) 1	21.081
	CNS0095602	Golden flower (diploid) 2	23.397
	CNS0095603	Golden flower (diploid) 3	21.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.464
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.454
	CNS0095610	Silvery flower (tetraploid) 1	5.721
	CNS0095611	Silvery flower (tetraploid) 2	5.499
	CNS0095612	Silvery flower (tetraploid) 3	5.048
	CNS0095613	Golden flower (tetraploid) 1	2.814
	CNS0095614	Golden flower (tetraploid) 2	8.420
	CNS0095615	Golden flower (tetraploid) 3	1.899
CRA001975	CRR073297	Stem 1	31.997
	CRR073298	Stem 2	27.757
	CRR073299	Stem 3	37.424
	CRR073300	Leaf 1	31.802
	CRR073301	Leaf 2	28.709
	CRR073302	Leaf 3	34.663
	CRR073303	Juvenile bud 1	35.289
	CRR073304	Juvenile bud 2	27.696
	CRR073305	Juvenile bud 3	38.075
	CRR073306	Third green 1	1.880
	CRR073307	Third green 2	1.072
	CRR073308	Third green 3	2.934
	CRR073309	Second white 1	2.018
	CRR073310	Second white 2	1.314
	CRR073311	Second white 3	1.438
	CRR073312	Silver flowering 1	8.569
	CRR073313	Silver flowering 2	5.907
	CRR073314	Silver flowering 3	4.857
	CRR073315	Gold flowering 1	35.563
	CRR073316	Gold flowering 2	49.076
	CRR073317	Gold flowering 3	56.362
	CRR073318	Tawny withering 1	43.542
	CRR073319	Tawny withering 2	46.603
	CRR073320	Tawny withering 3	35.591