Gene detail

Detail information of GWHGAAZE002143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004303127.1	4.9068E-165	PREDICTED: trans-resveratrol di-O-methyltransferase-like [Fragaria vesca subsp. vesca]
COG	YP_007203445.1	4E-26	methylase
Swissprot	tr\|B6VJS4\|ROMT_VITVI	1E-143	Trans-resveratrol di-O-methyltransferase
trEMBL	tr\|F5A838\|F5A838_ROSCH	3E-164	Orcinol O-methyltransferase-like protein {ECO:0000313\|EMBL:AEC13057.1}
TAIR10	AT4G35160.1	9E-45	O-methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71045147	71049830	-
GWHAAZE00000001	mRNA	71045147	71049830	-
GWHAAZE00000001	exon	71045147	71045443	-
GWHAAZE00000001	exon	71048489	71048524	-
GWHAAZE00000001	exon	71049066	71049830	-
GWHAAZE00000001	CDS	71049066	71049830	-
GWHAAZE00000001	CDS	71048489	71048524	-
GWHAAZE00000001	CDS	71045147	71045443	-

Transcript Sequence
>GWHTAAZE002147 ATGACAAATAGTGAGCAAACTAGTGAGCTACTTCATGCTCATGCTCATATATGGAACCATATATTAAATTTCATAAATTCAATGTCCCTCAATTGTGCCATCAAACTAGGCATACCGGATGCCATCAACAACCATGGCCATCCGATGACACTCACGGAACTCATCAACGCTCTCCCAATCAACAACAAGAAATCTGAAGGTATTCACCACCTCATGCGCATATTAATCCACTCGGGGTACTTCATCGAAAAAGAAATCCCCGAAAATGGACAAGAACTGGGGTATTGGCTTACTCCAGCTTCACAGCTGGTGCTAAGGAATGAGCCGTTGAGCATTACGCCATTTTTACAATTGGTACTGGATCCAGTCTTTAAAAAACCTTGGCATTATATGAGTGAGTGGTTCCAAAATGAGGAGCGCACACCGTTCGAGACGGCCCACGGGATGACCATGTGGGATTATGCGGACCACGAGTCAAAATTTAATAATCTGTTTAATGATGCAATGGCTAGTGATGCGAAGTTGATTGCGAGCGTGGTGGTTGAGGATTGTGCTGCAGTTTTCAAGGGGTTAAAGTCGATCGTGGATGTGGGTGGTGGGACTGGGACGATGGCGAAGGCGGTGGCTGGAGCGTACCTGGAGTTGAAGTACACGGTGCTTGATCTTCCACAAGTGGTGGGGGATTTGGTTGGGAGTGAAAATTTGAAATTTGTTGGTGGGGATATGTTTGAGGCTATTCCTCCTGCAAATGCTGTTTTACTCAAGGGGTGGGCATGGGCACGGGCACGGGCACAGGGAGAGTTGATATTACATGATTGGAATGATGAAGAGTGTGTGAAAATACTAAAGCTAAGCAAAGAGGAGGGGGGGAAGGTAATTATCATAGACATGGTGGTCAATAACTATAATAAACAAAAGAAAGATGATAATTCAATAGAAACACAACTGTTCTTCGATATGTTGATGATGGTTTTATTTACCGGGAAAGAGAGGACTGAGAAAGAATGGGCAAAGCTCTTCAAGGCTGCTGGCTTTAATGGAGGTTTTAAGATTTCTCCTATTCTTGGTTTGAGATCTGTCATTGAGGTTTTCCCTTAA

Network for GWHGAAZE002143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	28	581	3.30E-111
PF02883.21	Alpha_adaptinC2	764	858	3.80E-11
PF02296.17	Alpha_adaptin_C	871	979	6.40E-16
PF08100.12	Dimerisation	28	75	8.10E-13
PF00891.19	Methyltransf_2	128	346	1.10E-47

Protein Sequence

>GWHPAAZE001017
MALSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKNEKGLTPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTLVGNIGGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLFRKNPDVVNVDGWSDRMSQLLDERDLGVLTASMSLLVALVSNNHDSYWSCLPKCVKILERLARNQDIPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRVLMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLGTADFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAALKAREYLDKPAIHETMVKVSAYLLGEYSHLLARRPGCSPREIFSVIHEKLPTVSTSTIPILLSTYAKILMHSQPPDPELQNQIWAIFSKYESCIDVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQSSLIKKAEDTEADTAEQSAIKLRAQQQSSNALVVSDQRPANGAPPVGQPNPVKMPITSNVVRSLPGDHNSEEQAVSQANGTLTVVDPQPPAASADLLGDLLSPLAIEGPPGTTVQSERNLVPASEVAPNADEALAIELVGEQTNAVQPIGNIAERFHALCLKDSGVLYEDPYVQIGIKAEWRSQHGRFVLFLGNKNTAPLVSVQALVLPPSHLKLELSLVPDTIPPRAQVQCPVEVVNLHPSRDVAVLDFSYKFGTHVNVKLRLPAVLSKFLQPIPVTAEEFFPQWRSLSGPPLKLQEVVRGVRPMSLVEMANLFNSFRLMVCPGLDPNANNLVASTTFHSESTRAMLCLVRIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLIIIPPSSRVPAAPPVTLQVQPTPPPSSDPGAMLAGLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16040	ROMT	Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Endocytosis	map04144
		Endocrine and other factor-regulated calcium reabsorption	map04961
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0015031	biological_process	protein transport
GO:0072583	biological_process	clathrin-dependent endocytosis
GO:0030117	cellular_component	membrane coat
GO:0030131	cellular_component	clathrin adaptor complex
GO:0030122	cellular_component	AP-2 adaptor complex
GO:0035615	molecular_function	clathrin adaptor activity
GO:0046983	molecular_function	protein dimerization activity
GO:0008171	molecular_function	O-methyltransferase activity
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.254
	SRR3591706	second leaf	0.780
	SRR3591707	mature leaf	0.245
	SRR3591708	Shoot apex	0.700
	SRR3591709	Stem	0.487
	SRR3591710	White floral bud	380.427
	SRR3591711	White flower	205.536
	SRR3591712	Green floral bud	0.336
	SRR3591713	Yellow flower	51.484
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.287
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.148
	SRR8316900	Third green stage	2.004
	SRR8316901	Third green stage	0.865
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.542
	SRR6706287	Light intensity 50%	0.476
	SRR6706288	Light intensity 20%	0.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.357
	CNS0095593	Slightly white alabastrum(diploid) 2	0.148
	CNS0095594	Slightly white alabastrum(diploid) 3	0.736
	CNS0095595	Whole white alabastrum(diploid) 2	0.812
	CNS0095596	Whole white alabastrum(diploid) 3	1.643
	CNS0095597	Whole white alabastrum(diploid) 4	3.171
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.445
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.446
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.786
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.739
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.926
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.303
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.062
	CNS0095612	Silvery flower (tetraploid) 3	0.209
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.069
	CRR073298	Stem 2	0.227
	CRR073299	Stem 3	0.053
	CRR073300	Leaf 1	0.294
	CRR073301	Leaf 2	0.637
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	1.609
	CRR073304	Juvenile bud 2	1.588
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.197
	CRR073307	Third green 2	0.703
	CRR073308	Third green 3	0.209
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.139
	CRR073311	Second white 3	0.068
	CRR073312	Silver flowering 1	0.379
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.045
	CRR073315	Gold flowering 1	0.107
	CRR073316	Gold flowering 2	0.057
	CRR073317	Gold flowering 3	0.256
	CRR073318	Tawny withering 1	0.621
	CRR073319	Tawny withering 2	0.120
	CRR073320	Tawny withering 3	0.122