Gene detail

Detail information of GWHGAAZE002117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010093960.1	0	Receptor-like protein kinase HSL1 [Morus notabilis]
COG	YP_004775215.1	2E-45	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|W9QUZ1\|W9QUZ1_9ROSA	0	Receptor-like protein kinase HSL1 {ECO:0000313\|EMBL:EXB54947.1}
TAIR10	AT1G28440.1	0	HAESA-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69774289	69778469	+
GWHAAZE00000001	mRNA	69774289	69778469	+
GWHAAZE00000001	exon	69774289	69774488	+
GWHAAZE00000001	exon	69774700	69774904	+
GWHAAZE00000001	exon	69775493	69777416	+
GWHAAZE00000001	exon	69777526	69777577	+
GWHAAZE00000001	exon	69778160	69778469	+
GWHAAZE00000001	CDS	69774289	69774488	+
GWHAAZE00000001	CDS	69774700	69774904	+
GWHAAZE00000001	CDS	69775493	69777416	+
GWHAAZE00000001	CDS	69777526	69777577	+
GWHAAZE00000001	CDS	69778160	69778469	+

Transcript Sequence
>GWHTAAZE002121 ATGGATCACCAACTCCACTCAACCTTCCCTCCGCCTCCCTTTCCCCTCTGCAACCTTCCTTCCCTCTCCTCTCTTTCTTCCCTCAACTCTTCCCTCCCCTCCACCATCTCCACATGTCGTAATCTCACATACCTCGACCTCTCTCAGAACAACGTCGAGGGCCCCATTCCTCCCACCCTTGCCGAGATCCCTAACCTCCGGTACCTAAACCTTGACGGAAATTACCTATCAGGCGAGATCCCTGTGAGCTTCGGGCACTTCCGGCAACTTGAAGTGCTCATTCTCACGGGTAATCTTCTTGGTGGGAGTATTCCTTCAGCTCTAGGCAATATAACTACATTGAAGTCGCTGGACCTCGCTTATAACCCTTTTTCACATGGGCTGATCCCGCCGGAGCTTGGTAATGACTTCTGGTTGAGTGATTGTAACCTGGTCGGCGAATTTCCGGCGAGTTTTGCCCGAATGAGTCAACTCACTAACCTGGACGTATCGCAGAATAAACTCACCGGTTCAATACCAAATTTAATCTTTCAGTTCTCCAATGCCGTACAGATTCTACTGTACAACAACTCATTCACTAGCGAGTTACCGGTAAATGGGTGGACGAATCTGACGGCGTTGATTAACTTCGATGCTTCAATGAACATGTTGACAGGGACAATTCCAACCGAATTATGCGAGTTGAAACTCGGGTCGCTGAATTTGTTTGAAAACCAGCTGGAGGGTGTTATACCAGAGAGTATAGCTAAATCCCCGAATTTATACGAACTCAAATTGTTCAATAATCGGCTTATCGGATCTTTACCGAGTGATTTAGGGATGAATTCGCCGTTAAAAACGATTGATGTGTCGGGAAATCCTCTGTCCGGTAGGATTCCCGCAAATTTGTGCAAAAAAGGTGTGCTGGAAGAGCTGATTCTCATCTACTCTTCATTTTCCGGCGATATTCCGGCCACACTTGGTGCTTGCTGGAGCTTGACCCGAGTCCGGATGAGGAGTAATAGGCTCTGGGGGGAAGTTCCGGCAGGGCTTTGGGGTTTGCCGAATATTAATCTTCTTGATCTGCGTGAGAATTCATTTTCCGGGAGAATCTCGGATAGGATTTCTGGTGCATTTAACCTCTCAACACTATTGATTTCTCAGAATCAGTTTTCTGGGTCACTGCCAAATGAAATTGGGTCTTTAGGAAACTTGATTGAATTTTCTGTAAGTGATAATAAACTTACTGGGCAAATTCCAGGGACAGTGGTGCATTTGGACCAGTTAGTGAAGCTTGATTTAAGTAACAATCAAATTTCCGGGGAAATTCCTGTGGGAATACAATCTATGAACCAGCTCAATGAGCTTAATTTAGCAAACAATATGCTATCCGGGAAAATCCCAGATGAAATTGGGGATTTGCTTGTGCTTAATTACCTTGATCTTTCTCAGAATCATTTGTCTGGGAATATCCCAATTGGGTTGCAGAATTTGAAGCTTAATAAGCTAAATCTGTCGAGTAACCATCTTACGGGGGAAATTCCCCCTCTCTATGCTAAGTCTTCTTACAAGAATAGCTTTGTCGGTAATCCAGGCTTGTGTGGTGATCCTTCTGATCTTTGCCCCGAAAAGGGCAGACTTAAGCATCATGTTTATTTGTGGATACTTCGATCAATTTATATAATTGCTGCCCTAATTTTCGTTGTTGGCGTGGTTTGGTTCTTGTTAAAGTATCAAAAATTCAAGAACACAGAGAAAGGACCAGCCACGTGGAAATGGAGATCATTTCACAAGTTAGGTTTTGGCGAATTCGAAATTCTAGACTCTCTAAGCGAAGATAATTTCATCGGAAGTGGTGGTTCTGGTAAAGTCTATAAAGTTGTTCTTAGTAATGGCGAGGTAGTAGCAGTAAAGAAGATGAAAGACGAAACCCGTGTTATTGATTCATTCGAAACTGAAGTCGATACACTTGGAAAGATTAGGCACAAGAATATAATGAGATTATGGTGTTGTTGCAACAATGGGGATTATAAGCTTTTGGTGTATGAGTACATGCAAAATGGGAGTTTAGCGGACTTGTTGCATGGTAGCAAGAGGAGCAGTGGTTTGTTGGAGTACTGGCCAATGAGGCTTAAGATAGCATCAGATGCGGCTGAGGGGATCGCATATTTGCATCACGATTGTGTTCCTTCAATCATTCATAGGGATGTTAAGTCAAGCAATATATTGTTGGATGCGGAATTTGGAGCCAGAATTTCTGATTTTGGGGTTGCTAAAATGATTCGAGCGGTTAGTAATGGTCCGGAATCCATGTCTGCTATTGCTGGTTCTTGTGGTTACATTGCGCCAGTGATAAGCATAATCCTTGTCAAAGGGTTCGAGAAAGTAAGTCCTTTAGGAAGGCCACCGGTGGACCAATTTTTTGGGGAGAAAGACTTGGCTACATGGGTGTGCACCACCTTGGACCGGGAAGGTTTTGACCTCGTGCTCGACCCTACCCTCGATTCAACTTACAAGGACCAAATCTCCAAGGTTCTCGACATTGGTTTACGTTGCATTAGACCACTGCCTATTAACCGGCCTTCGATGAAAAGGGTGGTCAAAATGCTGCAAGATGTAGGGGCATATAATAAGCCCAAGGTTCCAAAGAAAGATGGCAAGCTCTCACCTTATTACTATGATGAAGATGGCTCTAGTCAAGTAGTACTGTAG

Network for GWHGAAZE002117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	33	76	1.50E-06
PF00560.34	LRR_1	278	297	1.5
PF13516.7	LRR_6	489	506	0.89
PF00069.26	Pkinase	605	776	8.30E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.477
	SRR3591706	second leaf	2.470
	SRR3591707	mature leaf	3.797
	SRR3591708	Shoot apex	1.318
	SRR3591709	Stem	0.507
	SRR3591710	White floral bud	0.675
	SRR3591711	White flower	0.582
	SRR3591712	Green floral bud	0.709
	SRR3591713	Yellow flower	0.131
SRP173429	SRR8316895	Juvenile bud stage	0.478
	SRR8316896	Juvenile bud stage	0.520
	SRR8316897	Juvenile bud stage	0.068
	SRR8316894	Third green stage	0.192
	SRR8316900	Third green stage	0.668
	SRR8316901	Third green stage	0.676
	SRR8316898	Complete white stage	0.169
	SRR8316899	Complete white stage	1.906
	SRR8316903	Complete white stage	0.551
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.246
	SRR8316905	Silver flowering stage	0.024
	SRR8316906	Gold flowering stage	0.087
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.407
SRP132670	SRR6706286	Control	0.393
	SRR6706287	Light intensity 50%	0.305
	SRR6706288	Light intensity 20%	0.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.301
	CNS0095593	Slightly white alabastrum(diploid) 2	0.168
	CNS0095594	Slightly white alabastrum(diploid) 3	0.190
	CNS0095595	Whole white alabastrum(diploid) 2	0.197
	CNS0095596	Whole white alabastrum(diploid) 3	0.072
	CNS0095597	Whole white alabastrum(diploid) 4	0.510
	CNS0095598	Silvery flower (diploied) 1	1.139
	CNS0095599	Silvery flower (diploied) 2	0.463
	CNS0095600	Silvery flower (diploied) 3	0.910
	CNS0095601	Golden flower (diploid) 1	0.924
	CNS0095602	Golden flower (diploid) 2	1.375
	CNS0095603	Golden flower (diploid) 3	1.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.409
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.227
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.113
	CNS0095610	Silvery flower (tetraploid) 1	0.202
	CNS0095611	Silvery flower (tetraploid) 2	0.581
	CNS0095612	Silvery flower (tetraploid) 3	0.204
	CNS0095613	Golden flower (tetraploid) 1	0.063
	CNS0095614	Golden flower (tetraploid) 2	0.259
	CNS0095615	Golden flower (tetraploid) 3	0.314
CRA001975	CRR073297	Stem 1	0.879
	CRR073298	Stem 2	0.677
	CRR073299	Stem 3	0.334
	CRR073300	Leaf 1	1.110
	CRR073301	Leaf 2	0.827
	CRR073302	Leaf 3	0.554
	CRR073303	Juvenile bud 1	0.357
	CRR073304	Juvenile bud 2	0.295
	CRR073305	Juvenile bud 3	0.411
	CRR073306	Third green 1	0.274
	CRR073307	Third green 2	0.132
	CRR073308	Third green 3	0.224
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.012
	CRR073311	Second white 3	0.069
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.010
	CRR073314	Silver flowering 3	0.084
	CRR073315	Gold flowering 1	0.827
	CRR073316	Gold flowering 2	1.353
	CRR073317	Gold flowering 3	0.701
	CRR073318	Tawny withering 1	0.323
	CRR073319	Tawny withering 2	0.149
	CRR073320	Tawny withering 3	0.202