Gene detail

Detail information of GWHGAAZE002116

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001078458.1	1.1107E-127	DNAJ heat shock protein [Arabidopsis thaliana]
COG	YP_003483720.1	3E-27	chaperone protein DnaJ
Swissprot	tr\|Q04960\|DNJH_CUCSA	2E-21	DnaJ protein homolog (Precursor)
trEMBL	tr\|A8MR40\|A8MR40_ARATH	4E-128	DNAJ heat shock protein {ECO:0000313\|EMBL:AEE85492.1}
TAIR10	AT5G01390.3	2E-66	DNAJ heat shock family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69760897	69763585	-
GWHAAZE00000001	mRNA	69760897	69763585	-
GWHAAZE00000001	exon	69763421	69763585	-
GWHAAZE00000001	exon	69762413	69762719	-
GWHAAZE00000001	exon	69760897	69761240	-
GWHAAZE00000001	CDS	69763421	69763585	-
GWHAAZE00000001	CDS	69762413	69762719	-
GWHAAZE00000001	CDS	69760897	69761240	-

Transcript Sequence
>GWHTAAZE002120 ATGGGAGTGGATTACTACAAAATATTGGGGGTAGATAAAGGAGCAAGCGAGGATGATTTGAAGAAAGCATATAGAAAACTGGCTATGAAGTGGCACCCTGATAAGAACCCTAATAACAAGAAAGATGCTGAAGCCATGTTCAAACAGATCTCTGAAGCCTATGATGTTCTAAGTGATCCCCAGAAGAGAGCAGTGTATGATCAATATGGTGAGGATGGCCTGAAGGGGCAGGTGCCACCACCGGGTGCCGGTGGTCCCGGCGGAGCCACCTACTTCTCCACTGGAGATGGGCCCACCACATTCCGATTCAACCCCAGAAGCGCGGACGATATATTTGCAGAGTTTTTCGGCCACTCAAGCCCGTTTGGAGGGATGGGAGGTGGAGGGATGGGAGGTGGTGGGATGAGAGGTGGAGGATTCTCAAGTAGCATATTTGGTGATGATTTGTTTAGTTCATTTGGGGGTGGTGGTGCGAATGTTATTCCAGCGGACCTCATCTTCATCATTGATGAGAAACCTCACAGTGTGTTCAGCGCGCGTGATGGAAATGACTTGGTCGTCACACAAAGGATATCTTTGGCTGAGGCATTGACCGGCTACACAGTCCACCTCACCACCCTTGATGGTCGGAATTTGACTATTCCGGTCACCAATGTGATCCACCCGGATTACGAGGAGGTTGTTCCAAGGGAAGGGATGCCAATCCCAAAAGATCCGACGAAGCGAGGGAACCTGAGGATAAAGTTCAACATCAGGTTTCCGACAAGGCTGACCACGGATCAAAAGGCTGGGATTAAGAGATTATTGGGTGCTTGA

Network for GWHGAAZE002116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	4	67	1.50E-28
PF01556.19	DnaJ_C	158	254	7.30E-23
PF02270.16	TFIIF_beta	82	145	2.80E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03139	TFIIF2, GTF2F2, TFG2	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.919
	SRR3591706	second leaf	6.795
	SRR3591707	mature leaf	53.753
	SRR3591708	Shoot apex	6.483
	SRR3591709	Stem	14.567
	SRR3591710	White floral bud	11.913
	SRR3591711	White flower	14.534
	SRR3591712	Green floral bud	13.127
	SRR3591713	Yellow flower	9.537
SRP173429	SRR8316895	Juvenile bud stage	31.713
	SRR8316896	Juvenile bud stage	100.226
	SRR8316897	Juvenile bud stage	25.470
	SRR8316894	Third green stage	5.038
	SRR8316900	Third green stage	25.946
	SRR8316901	Third green stage	44.152
	SRR8316898	Complete white stage	9.503
	SRR8316899	Complete white stage	44.583
	SRR8316903	Complete white stage	16.201
	SRR8316902	Silver flowering stage	36.408
	SRR8316904	Silver flowering stage	37.858
	SRR8316905	Silver flowering stage	29.382
	SRR8316906	Gold flowering stage	86.533
	SRR8316907	Gold flowering stage	79.586
	SRR8316908	Gold flowering stage	51.075
SRP132670	SRR6706286	Control	26.078
	SRR6706287	Light intensity 50%	22.642
	SRR6706288	Light intensity 20%	19.578
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.593
	CNS0095593	Slightly white alabastrum(diploid) 2	8.505
	CNS0095594	Slightly white alabastrum(diploid) 3	10.996
	CNS0095595	Whole white alabastrum(diploid) 2	8.501
	CNS0095596	Whole white alabastrum(diploid) 3	8.157
	CNS0095597	Whole white alabastrum(diploid) 4	7.201
	CNS0095598	Silvery flower (diploied) 1	16.164
	CNS0095599	Silvery flower (diploied) 2	65.622
	CNS0095600	Silvery flower (diploied) 3	64.638
	CNS0095601	Golden flower (diploid) 1	96.319
	CNS0095602	Golden flower (diploid) 2	62.064
	CNS0095603	Golden flower (diploid) 3	64.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.141
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.276
	CNS0095610	Silvery flower (tetraploid) 1	34.130
	CNS0095611	Silvery flower (tetraploid) 2	49.908
	CNS0095612	Silvery flower (tetraploid) 3	31.742
	CNS0095613	Golden flower (tetraploid) 1	37.111
	CNS0095614	Golden flower (tetraploid) 2	40.744
	CNS0095615	Golden flower (tetraploid) 3	24.645
CRA001975	CRR073297	Stem 1	2.596
	CRR073298	Stem 2	2.507
	CRR073299	Stem 3	2.349
	CRR073300	Leaf 1	5.081
	CRR073301	Leaf 2	3.859
	CRR073302	Leaf 3	4.650
	CRR073303	Juvenile bud 1	3.490
	CRR073304	Juvenile bud 2	3.123
	CRR073305	Juvenile bud 3	5.063
	CRR073306	Third green 1	13.826
	CRR073307	Third green 2	9.362
	CRR073308	Third green 3	8.224
	CRR073309	Second white 1	10.845
	CRR073310	Second white 2	18.770
	CRR073311	Second white 3	13.678
	CRR073312	Silver flowering 1	10.967
	CRR073313	Silver flowering 2	8.263
	CRR073314	Silver flowering 3	6.227
	CRR073315	Gold flowering 1	8.665
	CRR073316	Gold flowering 2	8.401
	CRR073317	Gold flowering 3	6.908
	CRR073318	Tawny withering 1	6.399
	CRR073319	Tawny withering 2	6.382
	CRR073320	Tawny withering 3	8.101