Gene detail

Detail information of GWHGAAZE002110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658092.1	9.60183E-50	PREDICTED: uncharacterized protein LOC104881057 [Vitis vinifera]
COG	YP_007121875.1	0.000000009	hypothetical protein Mic7113_2682
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	1E-18	Disease resistance protein RPS2
trEMBL	tr\|A5BBX3\|A5BBX3_VITVI	4E-50	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63327.1}
TAIR10	AT4G26090.1	3E-17	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69538873	69539574	-
GWHAAZE00000001	mRNA	69538873	69539574	-
GWHAAZE00000001	exon	69538873	69539574	-
GWHAAZE00000001	CDS	69538873	69539574	-

Transcript Sequence
>GWHTAAZE002114 GAAGAAAGAAAACTGGATGAATGGCGGTTTTGCAAGGAGATCAACTTTGCGGATAGTAGACTCTCGGAGCTGCCGGAAAACCCCTACTGCCCTTATTTGGAAAAATTGTTCTTACAACAAAACTCGAATTTGGCAGCGATTCCTTTCTCATTCTTTGAGAATATGCCTGCTCTCCAAGTTCTAGATTTATCTGATACAAGCATTAAATTTTTTCCCCCATCCGTTTCTAGTTTAGTTATGCTCCGGGAATTGTTTGTGAAAGATTGCCAATTTCTTATGGAATTACCACCTGAAATTGGAGCACTTTATAATCTCAAGGTGCTTGATCTTGAAGGTACCAAGATGATCTATCTACCCAAAGAAATCAGAATGCTGTTAAAGTTGGTACGCTTGAAGGTGTCCGTGTACAGATGTTCCAAAAAATACCGAGAAAGTAGAGGGATTGAGGCAATAATCCCGAGGGCAACGTTATCCAAATTCTATCACCTCAAGGAATTGAGTATCGAAGTGGATCCAGATTGGGGGTGGTGGGACATAGAGGTGGAAGCTCTCATTGAAGAGTTGTGTAACTTAAGAAACTTGCAGACACTGAAATTGTACCTGCCAAAGGTTGAGTTACTGCAACGATTGCTTCAAGTTACACACGGCAGTTGTAGGGAGACAGTTCTTGCCCTTGATATTCCCTACGTTATCAAACTTTAG

Network for GWHGAAZE002110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	31	90	2.10E-09
PF00264.21	Tyrosinase	30	80	7.80E-17
PF12142.9	PPO1_DWL	87	138	8.40E-25
PF12143.9	PPO1_KFDV	145	200	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.271
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.452
	SRR3591708	Shoot apex	0.367
	SRR3591709	Stem	0.632
	SRR3591710	White floral bud	1.264
	SRR3591711	White flower	1.049
	SRR3591712	Green floral bud	0.741
	SRR3591713	Yellow flower	0.222
SRP173429	SRR8316895	Juvenile bud stage	0.369
	SRR8316896	Juvenile bud stage	0.455
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.202
	SRR8316900	Third green stage	0.517
	SRR8316901	Third green stage	0.417
	SRR8316898	Complete white stage	0.127
	SRR8316899	Complete white stage	0.924
	SRR8316903	Complete white stage	0.501
	SRR8316902	Silver flowering stage	0.354
	SRR8316904	Silver flowering stage	0.122
	SRR8316905	Silver flowering stage	0.155
	SRR8316906	Gold flowering stage	0.365
	SRR8316907	Gold flowering stage	0.280
	SRR8316908	Gold flowering stage	0.059
SRP132670	SRR6706286	Control	0.584
	SRR6706287	Light intensity 50%	0.360
	SRR6706288	Light intensity 20%	0.477
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.999
	CNS0095593	Slightly white alabastrum(diploid) 2	0.059
	CNS0095594	Slightly white alabastrum(diploid) 3	0.486
	CNS0095595	Whole white alabastrum(diploid) 2	0.495
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.476
	CNS0095599	Silvery flower (diploied) 2	0.356
	CNS0095600	Silvery flower (diploied) 3	0.917
	CNS0095601	Golden flower (diploid) 1	0.064
	CNS0095602	Golden flower (diploid) 2	0.123
	CNS0095603	Golden flower (diploid) 3	0.217
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.620
	CRR073298	Stem 2	0.992
	CRR073299	Stem 3	0.123
	CRR073300	Leaf 1	0.914
	CRR073301	Leaf 2	0.952
	CRR073302	Leaf 3	0.274
	CRR073303	Juvenile bud 1	0.377
	CRR073304	Juvenile bud 2	0.120
	CRR073305	Juvenile bud 3	0.416
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.151
	CRR073311	Second white 3	0.142
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.603
	CRR073315	Gold flowering 1	0.080
	CRR073316	Gold flowering 2	1.323
	CRR073317	Gold flowering 3	0.618
	CRR073318	Tawny withering 1	0.120
	CRR073319	Tawny withering 2	0.781
	CRR073320	Tawny withering 3	0.135