Detail information of GWHGAAZE002086


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002326022.13.68918E-42hypothetical protein POPTR_0019s12020g [Populus trichocarpa]
trEMBLtr|B9IQQ0|B9IQQ0_POPTR1E-42Uncharacterized protein {ECO:0000313|EMBL:EEF00404.1}
TAIR10AT2G31090.12E-11Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6889253068893556-
GWHAAZE00000001mRNA6889253068893556-
GWHAAZE00000001exon6889344768893556-
GWHAAZE00000001exon6889253068892893-
GWHAAZE00000001CDS6889344768893556-
GWHAAZE00000001CDS6889277068892893-
GWHAAZE00000001three_prime_UTR6889253068892769-
Transcript Sequence

Network for GWHGAAZE002086

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
Protein Kinases RLK-Pelle_LRR-Xa family Protein Kinases RLK-Pelle_LRR-Xa
Protein Kinases RLK-Pelle_RLCK-IV family Protein Kinases RLK-Pelle_RLCK-IV
Transcription factor MADS-MIKC family Transcription factor MADS-MIKC
GO:0006783 heme biosynthetic process GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0005524 ATP binding GOslim:molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function
GO:0004325 ferrochelatase activity GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding GOslim:molecular_function
GO:0045944 positive regulation of transcription by RNA polymerase II GOslim:biological_process
GO:0042254 ribosome biogenesis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00762.20Ferrochelatase1693811.10E-66
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01772hemH, FECH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0006783biological_processheme biosynthetic process
GO:0004325molecular_functionferrochelatase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.008
SRR3591706second leaf9.920
SRR3591707mature leaf13.578
SRR3591708Shoot apex13.235
SRR3591709Stem39.913
SRR3591710White floral bud17.938
SRR3591711White flower11.501
SRR3591712Green floral bud8.186
SRR3591713Yellow flower3.314
SRP173429 SRR8316895Juvenile bud stage 11.176
SRR8316896Juvenile bud stage 14.105
SRR8316897Juvenile bud stage 7.987
SRR8316894Third green stage 1.780
SRR8316900Third green stage 4.607
SRR8316901Third green stage 8.853
SRR8316898Complete white stage 4.327
SRR8316899Complete white stage 17.214
SRR8316903Complete white stage 8.993
SRR8316902Silver flowering stage2.408
SRR8316904Silver flowering stage1.916
SRR8316905Silver flowering stage1.426
SRR8316906Gold flowering stage 6.455
SRR8316907Gold flowering stage 4.598
SRR8316908Gold flowering stage 2.908
SRP132670SRR6706286Control4.078
SRR6706287Light intensity 50%3.727
SRR6706288Light intensity 20%3.093
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.499
CNS0095593Slightly white alabastrum(diploid) 212.452
CNS0095594Slightly white alabastrum(diploid) 317.948
CNS0095595Whole white alabastrum(diploid) 210.292
CNS0095596Whole white alabastrum(diploid) 34.933
CNS0095597Whole white alabastrum(diploid) 46.534
CNS0095598Silvery flower (diploied) 137.314
CNS0095599Silvery flower (diploied) 221.156
CNS0095600Silvery flower (diploied) 39.705
CNS0095601Golden flower (diploid) 129.745
CNS0095602Golden flower (diploid) 219.720
CNS0095603Golden flower (diploid) 316.984
CNS0095604Slightly white alabastrum(tetraploid) 14.044
CNS0095605Slightly white alabastrum(tetraploid) 23.553
CNS0095606Slightly white alabastrum(tetraploid) 310.724
CNS0095607Whole white alabastrum(tetraploid) 12.828
CNS0095608Whole white alabastrum(tetraploid) 20.526
CNS0095609Whole white alabastrum(tetraploid) 35.121
CNS0095610Silvery flower (tetraploid) 14.095
CNS0095611Silvery flower (tetraploid) 21.910
CNS0095612Silvery flower (tetraploid) 32.036
CNS0095613Golden flower (tetraploid) 13.894
CNS0095614Golden flower (tetraploid) 23.350
CNS0095615Golden flower (tetraploid) 31.841
CRA001975CRR073297Stem 118.014
CRR073298Stem 218.614
CRR073299Stem 322.277
CRR073300Leaf 114.582
CRR073301Leaf 218.555
CRR073302Leaf 312.661
CRR073303Juvenile bud 115.790
CRR073304Juvenile bud 219.375
CRR073305Juvenile bud 319.446
CRR073306Third green 17.256
CRR073307Third green 213.946
CRR073308Third green 38.514
CRR073309Second white 12.605
CRR073310Second white 22.894
CRR073311Second white 31.237
CRR073312Silver flowering 10.900
CRR073313Silver flowering 21.651
CRR073314Silver flowering 31.765
CRR073315Gold flowering 149.481
CRR073316Gold flowering 239.985
CRR073317Gold flowering 334.712
CRR073318Tawny withering 138.888
CRR073319Tawny withering 253.671
CRR073320Tawny withering 331.583