Gene detail

Detail information of GWHGAAZE002082

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631587.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
COG	YP_008664261.1	8E-60	DNA/RNA helicase
Swissprot	tr\|P93008\|RH21_ARATH	0	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR10	AT2G33730.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68848708	68851513	+
GWHAAZE00000001	mRNA	68848708	68851513	+
GWHAAZE00000001	exon	68848708	68849161	+
GWHAAZE00000001	exon	68850023	68851170	+
GWHAAZE00000001	exon	68851274	68851513	+
GWHAAZE00000001	CDS	68848708	68849161	+
GWHAAZE00000001	CDS	68850023	68851170	+
GWHAAZE00000001	CDS	68851274	68851513	+

Transcript Sequence
>GWHTAAZE002086 ATGAAACGCTCCTCGGAACACAACCGCCGCCGCCACCATCACCACCGCCCCTCTCGTGATTGCAACCGGAACCACCGTGATTATGAACGCGAGGAAGAACAGAAGAATAAGAGGACTCGGGATCACCGTGACTACGTACGCGAGGAAGAACAGAAGAAGAAGAGGACTCGGGATCACCGTGATTACGTACGCGAGGAAAAACAGAAGAAGAAGAAGGCTCGGATGGAGAAACTGGCGGAGGAGCGAGAGCGGGAGAAGGAACTCGAAGCCATAAAAGAGCAGTATCTGGGACTAGGCAGTAAACAACCGAAGAAACGTGTGATTAAGCCTAGCGACAAGTTACGTTTCTCTTTCGATTGGGATTACACCACCGAGGACACCTCCCGGGACTGGAATTCCCTCTATCAAAACCCTCACCAGGCCCTTCTCTTGTTCGGTCGCGGCTTTCGAGCAGGTATGGACCGCAGGGAGCAGAGAATGGTTGCAGCCAAGAACGAGAAAGAGCTTAGTGTAAAAATTTGGAAGAAGGAGGGCGTTGAGGAAAAGCCGGAGGAGGCTGCTGCACTTAGACTGAAGAAGGAGGCAGTTGACACTTACAACACTTTTGACATGAGGGTCTACCGCCACTGGTCGGATAAGAAGCTTGAAGAAATGACGGAGAGGGACTGGAGGATTTTCAAGGAGGATTTCAACATTTCCTATAAGGGTGGTTCTAGGAGGATTCCCCAGCCGATGAGGAACTGGGCCGAGAGTCGACTGAGTTCTGAGCTGTTGGATGCGGTAGATAGGGCTGGGTACAAGACACCATCTCCCATTCAGATGGCTTACATTCCGCTTGGACTGCAGCAACGCGACGTCATAGGTGTTGCTCAGACCGGCTCTGGTAAAACTGCTGCTTTTGTTCTTCCTATGTTGACTTACATATCTAGGCTCCCTCGTATGAGTAAAGAGAATGCAGCAGAGGGGCCTTATGCTGTTGTGATGGCACCTACTCATGAACTTGTGGAGCACATTGAGAAAGAAACTGTCAAGCTTGCGCACTACTTGGGTATCAATGTGGTTTCAATCATGGGTGGGCAGTCCATTGAGGAGCAAGGATTCAGGATTACACAAGGTTGTGAGGTTGTGATTGCTACTCCAGGCCGTCTAATTGATTGCTTGAAGAAGCGCTACGTTGTATTGAACCAGTGTAATTATGTTGTTCTAGACGAGGCTGATCGCATGATTGATAAGAATTTCGAACTGCAAGTTGTGGGTGTTTTGAATGCAATTCCTTCTAGCAATTTCAAACCAGAGAATGAGGATGAAGGACTTGATGAGAAAAAGATCTATAGAACCACTTATATGTTCAGCTACCATGCCACCGGCCGTGGAGCATCTTGCAAGGAAGTACTTGAGAAATCCGTGGTGGTGAGGATTGGTGCTGCTGGAATGGTGACTGACCTCATTACTCAGCATGTGATTATGACAAAGGAATCAGAAAAGCTGTATAGGTTGCAGAATTTGCTCAACAAACTTGGAGATAAGACAGCAATAGTGTTTGTAAACACGAGAAATTCAGCTGATGGGCTTACCAAGAATTTGGTTAAAGCAGGATATTCGGACGGGATCGATATACCCGATGTGGCCTGTGTAATAAATTTTGATATGCCTGGTGATATCGAGAAGTACACTCACCGAATTGGACGAACTGGTCGTGCTGGGAAGACGGGTGTAGCCATCACATTTTTGACTTTGGATGATAATAATGTTTTCTATGATCTGAAGCGGACTCTTATTCAGAGTAACAGTCGTGTACCTCCTGAGCTTGCTAGACACAAGGCTTCGAATGTTAAACCATGA

Network for GWHGAAZE002082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	271	429	1.10E-40
PF00271.32	Helicase_C	534	568	6.20E-11
PF00646.34	F-box	27	62	0.0001

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.123
	SRR3591709	Stem	0.241
	SRR3591710	White floral bud	0.892
	SRR3591711	White flower	1.383
	SRR3591712	Green floral bud	0.307
	SRR3591713	Yellow flower	0.640
SRP173429	SRR8316895	Juvenile bud stage	0.398
	SRR8316896	Juvenile bud stage	1.237
	SRR8316897	Juvenile bud stage	0.279
	SRR8316894	Third green stage	0.447
	SRR8316900	Third green stage	1.361
	SRR8316901	Third green stage	1.193
	SRR8316898	Complete white stage	0.586
	SRR8316899	Complete white stage	1.532
	SRR8316903	Complete white stage	0.907
	SRR8316902	Silver flowering stage	0.621
	SRR8316904	Silver flowering stage	0.993
	SRR8316905	Silver flowering stage	0.376
	SRR8316906	Gold flowering stage	1.316
	SRR8316907	Gold flowering stage	1.685
	SRR8316908	Gold flowering stage	1.473
SRP132670	SRR6706286	Control	0.954
	SRR6706287	Light intensity 50%	1.341
	SRR6706288	Light intensity 20%	1.602
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.307
	CNS0095593	Slightly white alabastrum(diploid) 2	1.128
	CNS0095594	Slightly white alabastrum(diploid) 3	1.017
	CNS0095595	Whole white alabastrum(diploid) 2	0.733
	CNS0095596	Whole white alabastrum(diploid) 3	0.784
	CNS0095597	Whole white alabastrum(diploid) 4	1.048
	CNS0095598	Silvery flower (diploied) 1	1.054
	CNS0095599	Silvery flower (diploied) 2	0.985
	CNS0095600	Silvery flower (diploied) 3	1.334
	CNS0095601	Golden flower (diploid) 1	0.503
	CNS0095602	Golden flower (diploid) 2	0.836
	CNS0095603	Golden flower (diploid) 3	0.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.708
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.026
	CNS0095610	Silvery flower (tetraploid) 1	2.973
	CNS0095611	Silvery flower (tetraploid) 2	1.933
	CNS0095612	Silvery flower (tetraploid) 3	3.403
	CNS0095613	Golden flower (tetraploid) 1	1.373
	CNS0095614	Golden flower (tetraploid) 2	2.495
	CNS0095615	Golden flower (tetraploid) 3	1.675
CRA001975	CRR073297	Stem 1	1.254
	CRR073298	Stem 2	0.957
	CRR073299	Stem 3	0.740
	CRR073300	Leaf 1	1.294
	CRR073301	Leaf 2	1.777
	CRR073302	Leaf 3	0.807
	CRR073303	Juvenile bud 1	0.817
	CRR073304	Juvenile bud 2	0.611
	CRR073305	Juvenile bud 3	1.081
	CRR073306	Third green 1	0.654
	CRR073307	Third green 2	0.678
	CRR073308	Third green 3	0.496
	CRR073309	Second white 1	0.300
	CRR073310	Second white 2	0.214
	CRR073311	Second white 3	0.771
	CRR073312	Silver flowering 1	0.285
	CRR073313	Silver flowering 2	0.148
	CRR073314	Silver flowering 3	0.516
	CRR073315	Gold flowering 1	0.003
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.137
	CRR073318	Tawny withering 1	0.774
	CRR073319	Tawny withering 2	0.405
	CRR073320	Tawny withering 3	0.436