Detail information of GWHGAAZE002077


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280094.10PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera]
COGYP_003690422.10Ketol-acid reductoisomerase
Swissprottr|Q05758|ILV5_ARATH0Ketol-acid reductoisomerase, chloroplastic (Precursor)
trEMBLtr|A5AGN5|A5AGN5_VITVI0Ketol-acid reductoisomerase {ECO:0000256|PIRNR:PIRNR000118}
TAIR10AT3G58610.30ketol-acid reductoisomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6868773168694769-
GWHAAZE00000001mRNA6868773168694769-
GWHAAZE00000001exon6868773168688099-
GWHAAZE00000001exon6868978668689941-
GWHAAZE00000001exon6869043768690604-
GWHAAZE00000001exon6869108168691175-
GWHAAZE00000001exon6869125968691376-
GWHAAZE00000001exon6869180868692035-
GWHAAZE00000001exon6869258968692729-
GWHAAZE00000001exon6869287968692944-
GWHAAZE00000001exon6869417068694262-
GWHAAZE00000001exon6869447368694769-
GWHAAZE00000001CDS6869447368694769-
GWHAAZE00000001CDS6869417068694262-
GWHAAZE00000001CDS6869287968692944-
GWHAAZE00000001CDS6869258968692729-
GWHAAZE00000001CDS6869180868692035-
GWHAAZE00000001CDS6869125968691376-
GWHAAZE00000001CDS6869108168691175-
GWHAAZE00000001CDS6869043768690604-
GWHAAZE00000001CDS6868978668689941-
GWHAAZE00000001CDS6868773168688099-
Transcript Sequence

Network for GWHGAAZE002077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07991.13IlvN1202948.20E-31
PF01450.20IlvC3034324.30E-23
PF01450.20IlvC4455132.10E-07
PF13966.7zf-RVT1897.80E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00053ilvC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082biological_processbranched-chain amino acid biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0004455molecular_functionketol-acid reductoisomerase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf91.605
SRR3591706second leaf72.343
SRR3591707mature leaf82.581
SRR3591708Shoot apex129.131
SRR3591709Stem69.602
SRR3591710White floral bud75.411
SRR3591711White flower81.339
SRR3591712Green floral bud107.562
SRR3591713Yellow flower65.345
SRP173429 SRR8316895Juvenile bud stage 55.035
SRR8316896Juvenile bud stage 68.602
SRR8316897Juvenile bud stage 43.118
SRR8316894Third green stage 25.614
SRR8316900Third green stage 88.225
SRR8316901Third green stage 71.371
SRR8316898Complete white stage 19.876
SRR8316899Complete white stage 81.985
SRR8316903Complete white stage 29.738
SRR8316902Silver flowering stage14.841
SRR8316904Silver flowering stage17.541
SRR8316905Silver flowering stage8.439
SRR8316906Gold flowering stage 30.613
SRR8316907Gold flowering stage 33.828
SRR8316908Gold flowering stage 46.759
SRP132670SRR6706286Control85.853
SRR6706287Light intensity 50%83.305
SRR6706288Light intensity 20%91.924
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.433
CNS0095593Slightly white alabastrum(diploid) 268.670
CNS0095594Slightly white alabastrum(diploid) 358.809
CNS0095595Whole white alabastrum(diploid) 256.310
CNS0095596Whole white alabastrum(diploid) 357.496
CNS0095597Whole white alabastrum(diploid) 444.996
CNS0095598Silvery flower (diploied) 175.022
CNS0095599Silvery flower (diploied) 266.212
CNS0095600Silvery flower (diploied) 371.579
CNS0095601Golden flower (diploid) 185.832
CNS0095602Golden flower (diploid) 2100.789
CNS0095603Golden flower (diploid) 390.079
CNS0095604Slightly white alabastrum(tetraploid) 185.583
CNS0095605Slightly white alabastrum(tetraploid) 270.910
CNS0095606Slightly white alabastrum(tetraploid) 3177.371
CNS0095607Whole white alabastrum(tetraploid) 150.146
CNS0095608Whole white alabastrum(tetraploid) 238.636
CNS0095609Whole white alabastrum(tetraploid) 3147.501
CNS0095610Silvery flower (tetraploid) 195.839
CNS0095611Silvery flower (tetraploid) 2117.633
CNS0095612Silvery flower (tetraploid) 382.137
CNS0095613Golden flower (tetraploid) 150.108
CNS0095614Golden flower (tetraploid) 291.739
CNS0095615Golden flower (tetraploid) 348.863
CRA001975CRR073297Stem 1108.247
CRR073298Stem 2100.184
CRR073299Stem 3118.909
CRR073300Leaf 1106.074
CRR073301Leaf 2103.316
CRR073302Leaf 3115.764
CRR073303Juvenile bud 1108.792
CRR073304Juvenile bud 278.555
CRR073305Juvenile bud 3118.362
CRR073306Third green 117.455
CRR073307Third green 216.984
CRR073308Third green 319.144
CRR073309Second white 135.825
CRR073310Second white 223.102
CRR073311Second white 323.097
CRR073312Silver flowering 125.493
CRR073313Silver flowering 232.353
CRR073314Silver flowering 325.640
CRR073315Gold flowering 186.194
CRR073316Gold flowering 2109.227
CRR073317Gold flowering 3108.596
CRR073318Tawny withering 171.771
CRR073319Tawny withering 258.680
CRR073320Tawny withering 370.327