Gene detail

Detail information of GWHGAAZE002073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098036.1	8.18109E-17	PREDICTED: embryonic protein DC-8-like [Sesamum indicum]
Swissprot	tr\|Q41060\|SBP65_PEA	0.000003	Seed biotin-containing protein SBP65
trEMBL	tr\|A0A068V548\|A0A068V548_COFCA	5E-15	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15910.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68662016	68663207	+
GWHAAZE00000001	mRNA	68662016	68663207	+
GWHAAZE00000001	exon	68662016	68662148	+
GWHAAZE00000001	exon	68662224	68662429	+
GWHAAZE00000001	exon	68662884	68663207	+
GWHAAZE00000001	CDS	68662016	68662148	+
GWHAAZE00000001	CDS	68662224	68662429	+
GWHAAZE00000001	CDS	68662884	68663207	+

Transcript Sequence
>GWHTAAZE002077 ATGTCAGTGAAAAGCAGCTGCTGCAAAGGATGTGACAGTGGAGGGGCAAGGGGTGGTTGGGCATGCTGGGAAGGTGGCTGCAGTGGTGAAAGACAAGGCAGTGGTGGCGGTTGGGGGCTGCAGAGTATACCAGCGAAAGATGTGGTGGCCAATGTGGGGTATAGTGCTAAAGATTATGCGGGCGAGAAGTTGGCTCATGCAAAGGATGCTGTGGTTGCAACTGAAGAGAGTGCAAAGGAGTTTGCGGCTAGGAAAAAGGCTGAGGCTCAAAAGGAATTGGAAGCCAAGAAGTCAACTCAATCAAGGCTAGATTATAATTCTTCTGCCCTTTCTTATATTGGTGAAAGCCAAGGCCAAGGAAGTACTATGGAGAAGCAAGAAAGCACTATGCAAAAGGATGATCACGCAGCAGGAAGTACTATGGAGAGAATGGTAGAGAAACCAGTTGAGAAAGTAGAAAAGTTCTTTGCGGTGCCAGAGGAACATGAAGGGAAGGAAGAAGTGGGAGAAGGAGGGGGAGGGAGCGTATTGAGTGCGATCAAGGAGACCATTGCTGAAATTGGACAAACTACAACCCATTTCATAGTGGGTCAGCCACGATACGGAGAGGAAGGGGATTATGGAGACAAATTCGAGCAGGATATGGGAAAGAAAAGGCAGTAG

Network for GWHGAAZE002073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.123
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.235
	SRR3591711	White flower	0.153
	SRR3591712	Green floral bud	0.361
	SRR3591713	Yellow flower	0.219
SRP173429	SRR8316895	Juvenile bud stage	0.033
	SRR8316896	Juvenile bud stage	0.141
	SRR8316897	Juvenile bud stage	0.375
	SRR8316894	Third green stage	0.058
	SRR8316900	Third green stage	0.033
	SRR8316901	Third green stage	0.426
	SRR8316898	Complete white stage	0.065
	SRR8316899	Complete white stage	0.039
	SRR8316903	Complete white stage	0.026
	SRR8316902	Silver flowering stage	0.162
	SRR8316904	Silver flowering stage	0.078
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.316
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.028
	SRR6706287	Light intensity 50%	0.103
	SRR6706288	Light intensity 20%	0.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.543
	CNS0095593	Slightly white alabastrum(diploid) 2	0.194
	CNS0095594	Slightly white alabastrum(diploid) 3	0.546
	CNS0095595	Whole white alabastrum(diploid) 2	0.262
	CNS0095596	Whole white alabastrum(diploid) 3	0.130
	CNS0095597	Whole white alabastrum(diploid) 4	0.170
	CNS0095598	Silvery flower (diploied) 1	0.640
	CNS0095599	Silvery flower (diploied) 2	0.921
	CNS0095600	Silvery flower (diploied) 3	0.637
	CNS0095601	Golden flower (diploid) 1	0.744
	CNS0095602	Golden flower (diploid) 2	0.285
	CNS0095603	Golden flower (diploid) 3	0.435
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.082
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.072
	CNS0095610	Silvery flower (tetraploid) 1	0.083
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.010
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.135
	CRR073298	Stem 2	0.125
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.066
	CRR073302	Leaf 3	0.060
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.028
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.446
	CRR073319	Tawny withering 2	0.199
	CRR073320	Tawny withering 3	0.000