Detail information of GWHGAAZE002004


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002298418.16.10567E-42hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
Swissprottr|Q8GXC7|FBK50_ARATH6E-12F-box/kelch-repeat protein At3g06240
trEMBLtr|B9GFB6|B9GFB6_POPTR2E-42Uncharacterized protein {ECO:0000313|EMBL:EEE83223.1}
TAIR10AT3G06240.16E-11F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6699881566999564-
GWHAAZE00000001mRNA6699881566999564-
GWHAAZE00000001exon6699881566999564-
GWHAAZE00000001CDS6699881566999564-
Transcript Sequence

Network for GWHGAAZE002004

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07734.14FBA_1661829.50E-10
PF00195.20Chal_sti_synt_N72309.00E-125
PF02797.16Chal_sti_synt_C2403903.70E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00660CHS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Flavonoid biosynthesismap00941
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process
GO:0016746molecular_functiontransferase activity, transferring acyl groups
GO:0016747molecular_functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.422
SRR3591706second leaf4.164
SRR3591707mature leaf7.025
SRR3591708Shoot apex6.851
SRR3591709Stem4.801
SRR3591710White floral bud0.557
SRR3591711White flower0.732
SRR3591712Green floral bud0.656
SRR3591713Yellow flower0.809
SRP173429 SRR8316895Juvenile bud stage 3.189
SRR8316896Juvenile bud stage 3.444
SRR8316897Juvenile bud stage 3.456
SRR8316894Third green stage 2.798
SRR8316900Third green stage 4.988
SRR8316901Third green stage 2.756
SRR8316898Complete white stage 1.133
SRR8316899Complete white stage 5.247
SRR8316903Complete white stage 1.875
SRR8316902Silver flowering stage2.522
SRR8316904Silver flowering stage4.067
SRR8316905Silver flowering stage1.716
SRR8316906Gold flowering stage 14.397
SRR8316907Gold flowering stage 4.424
SRR8316908Gold flowering stage 8.606
SRP132670SRR6706286Control3.746
SRR6706287Light intensity 50%4.158
SRR6706288Light intensity 20%4.055
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.142
CNS0095593Slightly white alabastrum(diploid) 23.300
CNS0095594Slightly white alabastrum(diploid) 34.704
CNS0095595Whole white alabastrum(diploid) 24.224
CNS0095596Whole white alabastrum(diploid) 33.531
CNS0095597Whole white alabastrum(diploid) 41.567
CNS0095598Silvery flower (diploied) 14.660
CNS0095599Silvery flower (diploied) 21.866
CNS0095600Silvery flower (diploied) 33.239
CNS0095601Golden flower (diploid) 14.862
CNS0095602Golden flower (diploid) 23.359
CNS0095603Golden flower (diploid) 33.541
CNS0095604Slightly white alabastrum(tetraploid) 14.122
CNS0095605Slightly white alabastrum(tetraploid) 24.050
CNS0095606Slightly white alabastrum(tetraploid) 38.374
CNS0095607Whole white alabastrum(tetraploid) 14.789
CNS0095608Whole white alabastrum(tetraploid) 24.789
CNS0095609Whole white alabastrum(tetraploid) 33.875
CNS0095610Silvery flower (tetraploid) 15.151
CNS0095611Silvery flower (tetraploid) 23.318
CNS0095612Silvery flower (tetraploid) 32.417
CNS0095613Golden flower (tetraploid) 12.709
CNS0095614Golden flower (tetraploid) 24.820
CNS0095615Golden flower (tetraploid) 32.015
CRA001975CRR073297Stem 15.004
CRR073298Stem 24.333
CRR073299Stem 31.440
CRR073300Leaf 14.193
CRR073301Leaf 24.034
CRR073302Leaf 33.380
CRR073303Juvenile bud 12.863
CRR073304Juvenile bud 21.739
CRR073305Juvenile bud 31.712
CRR073306Third green 11.590
CRR073307Third green 20.869
CRR073308Third green 31.784
CRR073309Second white 11.882
CRR073310Second white 21.533
CRR073311Second white 31.250
CRR073312Silver flowering 12.956
CRR073313Silver flowering 21.813
CRR073314Silver flowering 32.255
CRR073315Gold flowering 10.605
CRR073316Gold flowering 22.694
CRR073317Gold flowering 30.297
CRR073318Tawny withering 11.193
CRR073319Tawny withering 24.490
CRR073320Tawny withering 31.497