Gene detail

Detail information of GWHGAAZE001994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	3.11492E-57	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-23	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	8E-48	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	3E-21	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66550932	66551972	-
GWHAAZE00000001	mRNA	66550932	66551972	-
GWHAAZE00000001	exon	66550932	66551972	-
GWHAAZE00000001	CDS	66550932	66551972	-

Transcript Sequence
>GWHTAAZE001998 ATGGTTAGGCATTGCACCGATGTGAATGAACGTCAGTTTAAAGAGCACTATTCTGTACACACTGATAATAATGATACATTTGTTGAATTTGCTCAATTGGATTTCCCATTCACTAGCAGAAGAAATTCCTACTTTAATATAGTTGCTACTTGTAATGGATTGGTATGCTTGTGTTATTACGAGGGGGCTAACGCAGACATCATAATCTTCTGGAACCCCTCTCTTAGAAAATCAGTCATCCTTCCCAAACCCACCATCGTATATGAGTGGCATGCCCTTTTGTGGCACTCTATCGGATTTGGAATTGACCCTGTAGCCACTGACTACAAGGTTGTTAGACTTGCCCATCTCTACATAGATGGGCTTCTAGTACTGCCAACGGTAGAGCTTTTTGAGCTTAGCACCGCCTCTTGGAGAAACATTAGTGTCGTGGATTTTCCGTATGTTACTTTTCCTTATGCTCGGCAGGCCTTTTTGAATGGTGTTGTCCACTGGACTGGATATATCCCGAATGATAGTATAAATTTTCTGATTGTCTCATTTGACATGAGGAATGAGTCACTTGGTGTTGTAATGGCGCCACCTTGTGGACCACAGGATCGGGACCGAAACATTGTCACAGTATTTGGAGAATCACTCTCTCTTTTACATCCTAACAGAGATCATTCTTGGTGCCTATGGGTGATGAAGGAGTATGGCGTAGAAAGCTCTTGGACAAAGCATTTCACAATTGATTTAAGAGGGGATGTGAGTAGACCAATTTGCTTTAGAGAGAATGGTGATATCATATTGGAGAGAAGAAGTCCGTTTGGTGAAGAAAGGGAGTTGGTTTCCTATGATTTTGAAAGTAAACTAATCAAGAATCTTGGAATTCATGGAACAGCAAACTTGTTTCACGTAGATACTTACAAGGAGAGCCTTGTCTTAGCTAAGGGCTTAAATGAAATCTTAGGGAGGAAGGAAAATTCGGTGGTGCAGTTTGCCAAGGGACATTTGTCCTACCTAGAGAAGACGAGAAGGTTATGGAAGAGAAAAGAATGA

Network for GWHGAAZE001994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	158	257	6.40E-09
PF00182.20	Glyco_hydro_19	1	210	6.90E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.272
	SRR3591706	second leaf	0.798
	SRR3591707	mature leaf	0.422
	SRR3591708	Shoot apex	2.674
	SRR3591709	Stem	1.631
	SRR3591710	White floral bud	0.720
	SRR3591711	White flower	1.756
	SRR3591712	Green floral bud	2.292
	SRR3591713	Yellow flower	0.451
SRP173429	SRR8316895	Juvenile bud stage	1.847
	SRR8316896	Juvenile bud stage	2.613
	SRR8316897	Juvenile bud stage	0.459
	SRR8316894	Third green stage	1.007
	SRR8316900	Third green stage	1.952
	SRR8316901	Third green stage	2.271
	SRR8316898	Complete white stage	0.808
	SRR8316899	Complete white stage	3.512
	SRR8316903	Complete white stage	1.397
	SRR8316902	Silver flowering stage	0.274
	SRR8316904	Silver flowering stage	1.249
	SRR8316905	Silver flowering stage	0.454
	SRR8316906	Gold flowering stage	0.627
	SRR8316907	Gold flowering stage	0.963
	SRR8316908	Gold flowering stage	0.583
SRP132670	SRR6706286	Control	1.721
	SRR6706287	Light intensity 50%	1.493
	SRR6706288	Light intensity 20%	1.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.750
	CNS0095593	Slightly white alabastrum(diploid) 2	3.400
	CNS0095594	Slightly white alabastrum(diploid) 3	1.208
	CNS0095595	Whole white alabastrum(diploid) 2	2.217
	CNS0095596	Whole white alabastrum(diploid) 3	1.762
	CNS0095597	Whole white alabastrum(diploid) 4	1.621
	CNS0095598	Silvery flower (diploied) 1	2.210
	CNS0095599	Silvery flower (diploied) 2	2.690
	CNS0095600	Silvery flower (diploied) 3	2.132
	CNS0095601	Golden flower (diploid) 1	3.423
	CNS0095602	Golden flower (diploid) 2	1.826
	CNS0095603	Golden flower (diploid) 3	2.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.539
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.627
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.650
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.302
	CNS0095610	Silvery flower (tetraploid) 1	1.457
	CNS0095611	Silvery flower (tetraploid) 2	2.901
	CNS0095612	Silvery flower (tetraploid) 3	1.021
	CNS0095613	Golden flower (tetraploid) 1	0.504
	CNS0095614	Golden flower (tetraploid) 2	0.672
	CNS0095615	Golden flower (tetraploid) 3	0.461
CRA001975	CRR073297	Stem 1	1.310
	CRR073298	Stem 2	2.515
	CRR073299	Stem 3	1.867
	CRR073300	Leaf 1	2.102
	CRR073301	Leaf 2	1.109
	CRR073302	Leaf 3	1.645
	CRR073303	Juvenile bud 1	1.442
	CRR073304	Juvenile bud 2	2.110
	CRR073305	Juvenile bud 3	1.490
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.413
	CRR073309	Second white 1	0.147
	CRR073310	Second white 2	0.239
	CRR073311	Second white 3	0.681
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.449
	CRR073316	Gold flowering 2	1.007
	CRR073317	Gold flowering 3	0.423
	CRR073318	Tawny withering 1	1.831
	CRR073319	Tawny withering 2	0.992
	CRR073320	Tawny withering 3	1.676