Gene detail

Detail information of GWHGAAZE001939

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010247826.1	8.7028E-152	PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Nelumbo nucifera]
Swissprot	tr\|O49080\|PSBP_FRIAG	5E-150	Oxygen-evolving enhancer protein 2, chloroplastic (Precursor)
trEMBL	tr\|A9PGP9\|A9PGP9_POPTR	1E-149	Photosystem II oxygen-evolving complex protein 2 {ECO:0000313\|EMBL:EEE80131.1}
TAIR10	AT1G06680.1	1E-111	photosystem II subunit P-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65166195	65168500	+
GWHAAZE00000001	mRNA	65166195	65168500	+
GWHAAZE00000001	exon	65166195	65166453	+
GWHAAZE00000001	exon	65167168	65167400	+
GWHAAZE00000001	exon	65167846	65167896	+
GWHAAZE00000001	exon	65168240	65168500	+
GWHAAZE00000001	CDS	65166195	65166453	+
GWHAAZE00000001	CDS	65167168	65167400	+
GWHAAZE00000001	CDS	65167846	65167896	+
GWHAAZE00000001	CDS	65168240	65168500	+

Transcript Sequence
>GWHTAAZE001943 ATGGCATCTACAGCATGTTTTTTGCACCCTCATGGACTAGTTTCTACACCAGCTAGATCTTCTTCCTTCTCGTCACAGCGCCTCGTGCCGACGGCGGCTAGGCCTAGCCAGGTCATCGTGTGCCGCGCGCAGAAGCAGGCGGCACACGAGGATGAAGCCACTGGTGAAGTTTCTCGCCGGTTGGCTCTGACTGTTCTCATTGGGGCTGCTGCCATTGGCTCCAAGGTTGCACCTGCTGATGCGGCCTACGGCGAAGCAGCAAATGTGTTTGGGAAGCCAAAGTCAAACACAGATTTCTTGCCATATGATGGAAAGGGCTTCAAGATAATTATACCAGCAAAATGGAACCCAAGCAAAGAAGTAGAGTACCCTGGTCAAGTCCTTAGATACGAAGACAATTTCGACACCACCAGCAATCTCTCGGTTATGGTCACCCCTACCGACAAGAAATCCATCACCGACTACGGCTCCCCCGAAGAATTCCTCTCGAAAGTTGATTATTTGCTGGGGAAACAAGCCTACTCCGGCAAAACCGCATCAGAGGGTGGATTTGACCCAGATGCAGTGGCAACAGCAAACATATTGGAGACAGCAACTCCAGTAGTCGGCGGCAAACAATACTACTTATTGTCGGTGCTGACAAGGACAGCTGATGGAGACGAAGGCGGCAAACACCAACTGATCAACGCCACTGTGTCCGACGGCAAGCTTTACATATGCAAGGCTCAAGCTGGAGACAAGAGATGGTTTAAAGGAGCAAGGAAGTTTGTTGAGAGTGCTACCAATTCTTTCAGTGTTGCATAA

Network for GWHGAAZE001939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01789.17	PsbP	101	266	2.70E-36
PF02617.18	ClpS	64	130	3.40E-16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	N-domain

KEGG pathway

KO	Enzyme	pathway	mapID
K02717	psbP	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0015979	biological_process	photosynthesis
GO:0009523	cellular_component	photosystem II
GO:0009654	cellular_component	photosystem II oxygen evolving complex
GO:0019898	cellular_component	extrinsic component of membrane
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	883.479
	SRR3591706	second leaf	3758.301
	SRR3591707	mature leaf	2677.754
	SRR3591708	Shoot apex	1377.581
	SRR3591709	Stem	620.673
	SRR3591710	White floral bud	111.478
	SRR3591711	White flower	109.312
	SRR3591712	Green floral bud	55.238
	SRR3591713	Yellow flower	77.493
SRP173429	SRR8316895	Juvenile bud stage	272.203
	SRR8316896	Juvenile bud stage	198.652
	SRR8316897	Juvenile bud stage	180.272
	SRR8316894	Third green stage	80.422
	SRR8316900	Third green stage	148.658
	SRR8316901	Third green stage	131.259
	SRR8316898	Complete white stage	60.019
	SRR8316899	Complete white stage	106.419
	SRR8316903	Complete white stage	97.819
	SRR8316902	Silver flowering stage	35.145
	SRR8316904	Silver flowering stage	44.153
	SRR8316905	Silver flowering stage	23.718
	SRR8316906	Gold flowering stage	50.606
	SRR8316907	Gold flowering stage	52.796
	SRR8316908	Gold flowering stage	63.206
SRP132670	SRR6706286	Control	219.162
	SRR6706287	Light intensity 50%	140.951
	SRR6706288	Light intensity 20%	128.931
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	143.176
	CNS0095593	Slightly white alabastrum(diploid) 2	105.059
	CNS0095594	Slightly white alabastrum(diploid) 3	103.675
	CNS0095595	Whole white alabastrum(diploid) 2	80.204
	CNS0095596	Whole white alabastrum(diploid) 3	82.011
	CNS0095597	Whole white alabastrum(diploid) 4	63.877
	CNS0095598	Silvery flower (diploied) 1	279.712
	CNS0095599	Silvery flower (diploied) 2	267.508
	CNS0095600	Silvery flower (diploied) 3	154.755
	CNS0095601	Golden flower (diploid) 1	221.103
	CNS0095602	Golden flower (diploid) 2	198.943
	CNS0095603	Golden flower (diploid) 3	198.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	136.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	148.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	192.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	101.426
	CNS0095610	Silvery flower (tetraploid) 1	100.182
	CNS0095611	Silvery flower (tetraploid) 2	186.948
	CNS0095612	Silvery flower (tetraploid) 3	102.462
	CNS0095613	Golden flower (tetraploid) 1	66.609
	CNS0095614	Golden flower (tetraploid) 2	112.945
	CNS0095615	Golden flower (tetraploid) 3	124.659
CRA001975	CRR073297	Stem 1	562.272
	CRR073298	Stem 2	466.542
	CRR073299	Stem 3	713.966
	CRR073300	Leaf 1	101.016
	CRR073301	Leaf 2	147.759
	CRR073302	Leaf 3	139.720
	CRR073303	Juvenile bud 1	97.189
	CRR073304	Juvenile bud 2	87.194
	CRR073305	Juvenile bud 3	137.255
	CRR073306	Third green 1	82.728
	CRR073307	Third green 2	87.560
	CRR073308	Third green 3	76.364
	CRR073309	Second white 1	120.553
	CRR073310	Second white 2	77.754
	CRR073311	Second white 3	56.095
	CRR073312	Silver flowering 1	84.851
	CRR073313	Silver flowering 2	71.267
	CRR073314	Silver flowering 3	78.790
	CRR073315	Gold flowering 1	3556.319
	CRR073316	Gold flowering 2	3203.118
	CRR073317	Gold flowering 3	2590.183
	CRR073318	Tawny withering 1	428.394
	CRR073319	Tawny withering 2	394.453
	CRR073320	Tawny withering 3	424.289