Gene detail

Detail information of GWHGAAZE001897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU39499.1	2.7783E-151	hypothetical protein MIMGU_mgv1a004365mg [Erythranthe guttata]
COG	YP_827776.1	5E-33	beta-N-acetylhexosaminidase
Swissprot	tr\|Q8L7S6\|HEXO3_ARATH	7E-128	Beta-hexosaminidase 3 (Precursor)
trEMBL	tr\|A0A022RHQ5\|A0A022RHQ5_ERYGU	1E-151	Uncharacterized protein {ECO:0000313\|EMBL:EYU39499.1}
TAIR10	AT1G65590.1	9E-106	beta-hexosaminidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63977603	63984512	+
GWHAAZE00000001	mRNA	63977603	63984512	+
GWHAAZE00000001	exon	63977603	63977932	+
GWHAAZE00000001	exon	63978873	63978947	+
GWHAAZE00000001	exon	63979697	63979732	+
GWHAAZE00000001	exon	63979837	63979948	+
GWHAAZE00000001	exon	63981661	63981731	+
GWHAAZE00000001	exon	63983232	63983366	+
GWHAAZE00000001	exon	63983453	63983526	+
GWHAAZE00000001	exon	63984371	63984512	+
GWHAAZE00000001	CDS	63977603	63977932	+
GWHAAZE00000001	CDS	63978873	63978947	+
GWHAAZE00000001	CDS	63979697	63979732	+
GWHAAZE00000001	CDS	63979837	63979948	+
GWHAAZE00000001	CDS	63981661	63981731	+
GWHAAZE00000001	CDS	63983232	63983366	+
GWHAAZE00000001	CDS	63983453	63983526	+
GWHAAZE00000001	CDS	63984371	63984512	+

Transcript Sequence
>GWHTAAZE001901 ATGAGGAAGATTATTGTGCATAGCTTTATTCTTGGACTTGTATTTCAACTCCTTGACATACATGATGCTCTCGAAATAAAGAGTTTGAACGTATGGCCAATGCCTGAATCTGTGGACTATGGAGTAGGAAGTCTTTATCTAAGCACGGAATTTGAGCTGAAGACTGAAGGAAGCAAATATGTTGATGGTTATGGCATTCTCAAGGATGGTTTCTTGAGGTTAATCGATCTTGTTAAAGGGCTCCACGTTATTGAATCTCAAGTTTCCAACTCCCACTCCCCTAGCCTGTTACATGGAATAAATGTGGTTATCTTCTCGCCGAATGATGAGTTACAATATGGAGTTAACGAGTCTTACAAATTATCTATCCCTGCGAATGGGGAGCGGGTTTATGCAAGTCTTGAGGCGCAAACGATTTATGGGGCTTTGCATGGGCTACAGACATTCAGCCAATTGTGCTATTTCAACTTCACAAGCAGAACGGTTGAAATTCGCCAAGTCCCATTGACCATTACTGATAAGCCAAGGTTCTCTTATCGAGGCCTGTTAATTGATACATCTCGACACTATCAGTCGTTGCCAATGATTAAGAAAGTTATTGATTCTATGGCTTATGCAAAGCTGAATGTGCTTCACTGGCACATTGTAGATACACAATCGTTCCCTCTGGAAATACCTTCATATCCAAAAATGTGGGAAGGTTCTTATTCTATTTCAGAACGATATACAATGGCTGATGCTGCCGAGATTGTGAGGCAATTTTGCAGTTATGCTCAAAGACGAGGGATCAATGTATTATCCGAGATTGACGTTCCGGGACATGCTCGCTCCTGGGGGACTGGTTATCCTTCCCTATGGCCATCAACGGATTGTAAAGAGCCACTCGATGTCAGCAATGAATTCACCTTCAAAGTTATCGAGGGGATTCTTTCAGGTAGACCCCACTTCCTGATAGAAACATTTGCTTCTGATTGA

Network for GWHGAAZE001897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14845.7	Glycohydro_20b2	31	152	8.30E-14
PF00728.23	Glyco_hydro_20	177	288	4.90E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12373	HEXA_B	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Various types of N-glycan biosynthesis	map00513
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004563	molecular_function	beta-N-acetylhexosaminidase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.738
	SRR3591706	second leaf	1.785
	SRR3591707	mature leaf	1.340
	SRR3591708	Shoot apex	1.474
	SRR3591709	Stem	1.195
	SRR3591710	White floral bud	18.114
	SRR3591711	White flower	1.807
	SRR3591712	Green floral bud	27.058
	SRR3591713	Yellow flower	0.253
SRP173429	SRR8316895	Juvenile bud stage	1.856
	SRR8316896	Juvenile bud stage	5.011
	SRR8316897	Juvenile bud stage	3.324
	SRR8316894	Third green stage	3.514
	SRR8316900	Third green stage	16.815
	SRR8316901	Third green stage	14.910
	SRR8316898	Complete white stage	0.645
	SRR8316899	Complete white stage	1.357
	SRR8316903	Complete white stage	1.394
	SRR8316902	Silver flowering stage	0.884
	SRR8316904	Silver flowering stage	1.420
	SRR8316905	Silver flowering stage	0.790
	SRR8316906	Gold flowering stage	2.558
	SRR8316907	Gold flowering stage	2.287
	SRR8316908	Gold flowering stage	2.874
SRP132670	SRR6706286	Control	6.868
	SRR6706287	Light intensity 50%	7.236
	SRR6706288	Light intensity 20%	6.816
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.517
	CNS0095593	Slightly white alabastrum(diploid) 2	6.744
	CNS0095594	Slightly white alabastrum(diploid) 3	7.073
	CNS0095595	Whole white alabastrum(diploid) 2	20.709
	CNS0095596	Whole white alabastrum(diploid) 3	26.905
	CNS0095597	Whole white alabastrum(diploid) 4	21.443
	CNS0095598	Silvery flower (diploied) 1	1.355
	CNS0095599	Silvery flower (diploied) 2	3.897
	CNS0095600	Silvery flower (diploied) 3	2.193
	CNS0095601	Golden flower (diploid) 1	1.400
	CNS0095602	Golden flower (diploid) 2	1.359
	CNS0095603	Golden flower (diploid) 3	1.818
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.324
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.029
	CNS0095610	Silvery flower (tetraploid) 1	1.362
	CNS0095611	Silvery flower (tetraploid) 2	1.460
	CNS0095612	Silvery flower (tetraploid) 3	5.064
	CNS0095613	Golden flower (tetraploid) 1	0.664
	CNS0095614	Golden flower (tetraploid) 2	0.536
	CNS0095615	Golden flower (tetraploid) 3	4.298
CRA001975	CRR073297	Stem 1	2.033
	CRR073298	Stem 2	2.920
	CRR073299	Stem 3	1.406
	CRR073300	Leaf 1	8.210
	CRR073301	Leaf 2	6.080
	CRR073302	Leaf 3	3.874
	CRR073303	Juvenile bud 1	7.000
	CRR073304	Juvenile bud 2	6.750
	CRR073305	Juvenile bud 3	0.925
	CRR073306	Third green 1	3.146
	CRR073307	Third green 2	4.646
	CRR073308	Third green 3	3.164
	CRR073309	Second white 1	0.869
	CRR073310	Second white 2	0.653
	CRR073311	Second white 3	1.698
	CRR073312	Silver flowering 1	7.156
	CRR073313	Silver flowering 2	4.836
	CRR073314	Silver flowering 3	2.125
	CRR073315	Gold flowering 1	4.928
	CRR073316	Gold flowering 2	1.715
	CRR073317	Gold flowering 3	1.520
	CRR073318	Tawny withering 1	3.853
	CRR073319	Tawny withering 2	3.695
	CRR073320	Tawny withering 3	2.899