Gene detail

Detail information of GWHGAAZE001858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007048761.1	0	Nucleotide/sugar transporter family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8H184\|PT106_ARATH	0	Probable sugar phosphate/phosphate translocator At1g06470
trEMBL	tr\|A0A061DSG0\|A0A061DSG0_THECC	0	Nucleotide/sugar transporter family protein isoform 1 {ECO:0000313\|EMBL:EOX92918.1}
TAIR10	AT1G06470.2	5E-151	Nucleotide/sugar transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62964205	62981204	-
GWHAAZE00000001	mRNA	62964205	62981204	-
GWHAAZE00000001	exon	62980663	62981204	-
GWHAAZE00000001	exon	62980032	62980201	-
GWHAAZE00000001	exon	62979413	62979498	-
GWHAAZE00000001	exon	62979251	62979300	-
GWHAAZE00000001	exon	62974218	62974285	-
GWHAAZE00000001	exon	62972958	62973058	-
GWHAAZE00000001	exon	62970200	62970418	-
GWHAAZE00000001	exon	62969757	62969843	-
GWHAAZE00000001	exon	62969095	62969189	-
GWHAAZE00000001	exon	62964205	62964307	-
GWHAAZE00000001	CDS	62980663	62981204	-
GWHAAZE00000001	CDS	62980032	62980201	-
GWHAAZE00000001	CDS	62979413	62979498	-
GWHAAZE00000001	CDS	62979251	62979300	-
GWHAAZE00000001	CDS	62974218	62974285	-
GWHAAZE00000001	CDS	62972958	62973058	-
GWHAAZE00000001	CDS	62970200	62970418	-
GWHAAZE00000001	CDS	62969757	62969843	-
GWHAAZE00000001	CDS	62969095	62969189	-
GWHAAZE00000001	CDS	62964205	62964307	-

Transcript Sequence
>GWHTAAZE001862 ATGGTAGAGAGTGATTTAGACAGACAAAAGATTGACTACTCTGAAGATAAGGACATTCAGAGTGAAAACCAAGGGTTAGGTTTTCAGAGGGACCCTTCCTTCTCAGGTTGGTATGATGAAGATGAGATACTTTATTCAGATCATGAATTAGAGAAGGTGGGTGCAAATACTGAAGATTTTGATTTCGAATTGCCTTTGTTTCCACAAGGTGGGCTCCAAAATGGATTTCTAGACAGGGATAGACACAAATATAGCAAGGTTGAGCTGAAAAGCGAGCACGTAAAGGGTAGTAACAATATGGATGTTGTTTCTACTCTTGGTGCAGGAAATGGATCTGAAAAGTATGAGCCTTTTGATATTGAAAATTCGTCTGAAAGTGAAAGAGAGCCACATTTCTCAAATAGGGGAGTTGGTGGGTCTAGTTCGATGATTAAGGACGAAGCATCACTGCCAAAATCCAAGAGCCCTATTTCTGCCGCAGATGTACTCAAGACATTGTTTTTCATTCTTGTCTGGTACACCTTCAGTACATTCTTGACATTGTACAATAAGACTCTGTTAGGAGATGATATGGGAAGATTCCCAGCTCCCTTATTGATGAATACGGTTCACTTTGGAATGCAAGCTGTTTTATCAAAGGCGATTACATGGTATTGGTCTCAAAGATTTCAGCCTAGTATTAGAATGTCATGGAGGGATTACTCCTTGAGAGTTTTACCAACTGCTCTTGGAACGGCACTGGATATTAACTTGAGCAATGCTTCCCTTGTCTTCATCTCTGTTACATTTGCCACTATGTGTAAATCTGCAGCTCCCATATTTCTACTTATATTTGCTTTTGCATTCAAGTTGGAGTCTCCTAGCGTTAAACTTTTAGGTATCATGTTAATAATTTCAGTTGGAATACTATTGACAGTTGCAAAAGAGACGGAATTTGAGTTTTGGGGTTTCGCATTTGTGATGCTTGCTGCTGTCATGTCTGGCTTTCGTTGGACAATGACTCAAATTCTTCTTCAGATTATTTCAATGGCTCATATCAGTTTGTGTTCAGGTCTGAAGAATCCCCTGACATTGATGAGCTATGTAACCCCAGTAATGGCACTGGCAACTGGTCTACTCTCTCTTGTTTTGGATCCATGGCTTGAATTTAAAGACAGCAGTTATTTCAATAGCTCATGGCACATCGTTAGAAGCTGTCTCTTGATGCTTTTTGGTGGAACTCTTGCCTTTTTTATGGTTTTAACAGAATATATTCTCATCTCTGTAACAAGCGCAGTAACGGTTACTATAGCTGGAGTAGTTAAGGAAGCTGTCACTATATTGGTTGCTGTATTTTACTTCCACGACGAATTCACCTGGTTGAAAGGGGTTGGTCTCATCACAATCATGGTTGGTGTCAGTTTGTTTAACTGGTTCAAATACCAAAAGCTACACAAGGGCGAATCAAACAAAGAAGACACAACGGCTGGAAAATATGTTATTCTTGAGGAGATGGATGATCAAGATGATGATGGTATCTGA

Network for GWHGAAZE001858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03151.17	TPT	164	470	5.80E-26
PF07821.13	Alpha-amyl_C2	304	362	2.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.151
	SRR3591706	second leaf	21.648
	SRR3591707	mature leaf	15.264
	SRR3591708	Shoot apex	18.316
	SRR3591709	Stem	34.752
	SRR3591710	White floral bud	24.341
	SRR3591711	White flower	18.880
	SRR3591712	Green floral bud	24.510
	SRR3591713	Yellow flower	11.797
SRP173429	SRR8316895	Juvenile bud stage	13.952
	SRR8316896	Juvenile bud stage	13.612
	SRR8316897	Juvenile bud stage	8.633
	SRR8316894	Third green stage	7.310
	SRR8316900	Third green stage	24.607
	SRR8316901	Third green stage	21.286
	SRR8316898	Complete white stage	16.418
	SRR8316899	Complete white stage	26.394
	SRR8316903	Complete white stage	22.483
	SRR8316902	Silver flowering stage	11.790
	SRR8316904	Silver flowering stage	18.027
	SRR8316905	Silver flowering stage	6.770
	SRR8316906	Gold flowering stage	24.221
	SRR8316907	Gold flowering stage	20.568
	SRR8316908	Gold flowering stage	29.337
SRP132670	SRR6706286	Control	2.402
	SRR6706287	Light intensity 50%	3.552
	SRR6706288	Light intensity 20%	3.507
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.855
	CNS0095593	Slightly white alabastrum(diploid) 2	14.602
	CNS0095594	Slightly white alabastrum(diploid) 3	13.046
	CNS0095595	Whole white alabastrum(diploid) 2	13.699
	CNS0095596	Whole white alabastrum(diploid) 3	16.194
	CNS0095597	Whole white alabastrum(diploid) 4	14.662
	CNS0095598	Silvery flower (diploied) 1	10.174
	CNS0095599	Silvery flower (diploied) 2	11.137
	CNS0095600	Silvery flower (diploied) 3	16.629
	CNS0095601	Golden flower (diploid) 1	7.142
	CNS0095602	Golden flower (diploid) 2	14.144
	CNS0095603	Golden flower (diploid) 3	12.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.559
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.314
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.999
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.105
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.960
	CNS0095610	Silvery flower (tetraploid) 1	19.004
	CNS0095611	Silvery flower (tetraploid) 2	18.213
	CNS0095612	Silvery flower (tetraploid) 3	30.495
	CNS0095613	Golden flower (tetraploid) 1	9.902
	CNS0095614	Golden flower (tetraploid) 2	14.616
	CNS0095615	Golden flower (tetraploid) 3	15.943
CRA001975	CRR073297	Stem 1	5.086
	CRR073298	Stem 2	4.565
	CRR073299	Stem 3	5.727
	CRR073300	Leaf 1	5.999
	CRR073301	Leaf 2	4.984
	CRR073302	Leaf 3	4.115
	CRR073303	Juvenile bud 1	3.465
	CRR073304	Juvenile bud 2	4.017
	CRR073305	Juvenile bud 3	3.677
	CRR073306	Third green 1	2.591
	CRR073307	Third green 2	2.057
	CRR073308	Third green 3	4.091
	CRR073309	Second white 1	3.573
	CRR073310	Second white 2	6.246
	CRR073311	Second white 3	4.774
	CRR073312	Silver flowering 1	3.875
	CRR073313	Silver flowering 2	2.734
	CRR073314	Silver flowering 3	2.768
	CRR073315	Gold flowering 1	1.513
	CRR073316	Gold flowering 2	3.012
	CRR073317	Gold flowering 3	0.950
	CRR073318	Tawny withering 1	7.770
	CRR073319	Tawny withering 2	6.513
	CRR073320	Tawny withering 3	10.213