Gene detail

Detail information of GWHGAAZE001850

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDX98481.1	2.0321E-163	BnaC05g38940D [Brassica napus]
COG	YP_003102278.1	4E-35	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	2E-107	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A078EBB9\|A0A078EBB9_BRANA	8E-164	BnaC05g38940D protein {ECO:0000313\|EMBL:CDX98481.1}
TAIR10	AT3G14690.1	3E-88	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62650233	62658306	+
GWHAAZE00000001	mRNA	62650233	62658306	+
GWHAAZE00000001	exon	62650233	62650526	+
GWHAAZE00000001	exon	62650831	62651255	+
GWHAAZE00000001	exon	62653865	62654166	+
GWHAAZE00000001	exon	62657567	62657784	+
GWHAAZE00000001	exon	62658058	62658306	+
GWHAAZE00000001	CDS	62650233	62650526	+
GWHAAZE00000001	CDS	62650831	62651255	+
GWHAAZE00000001	CDS	62653865	62654166	+
GWHAAZE00000001	CDS	62657567	62657784	+
GWHAAZE00000001	CDS	62658058	62658306	+

Transcript Sequence
>GWHTAAZE001854 ATGGCGACGATAACGAAAGGAGAAGCTAGTGATGATTTATTGGGCATGCTATTGGAATCTAATATGAGAGAAATTGAACATGGGAGTAAGAGTGTCGGACTGAGTATTAAAGATGTTATTGAAGAATGTAAGGTATTTTATTTTGCTGGACAGGAAACTACGTCAGTTTTGTTGGTGTGGACTATGATTTTGTTAAGCATGAATCTGAATTGGCAAACAAAAGCCAGAGAAGAGGTTTTGCAAGTATTTGGAAATAACAAACCGAACGTTGATGGGTTAAATCGCCTAAAGATTGTAACTATGATCTTGTACGAAGTTTTAAGGTTATATTCGCCCATACCAGCACTCAATCGAATTGTTTATAAAGATACTACACTAGGAGAAATGTCCCTACCGGCTGGTGTAGAGGTAGGACTACCACTTATGCTAATTCACCATGACTATGATATATGGGGTGACAATGCAAAGGAGTTTAAACCAGAAAGATTTTCGGAAGGTGTATCAAAAGCGACAAAGAACAAAATGTCATTTTTCTCATTCAGCACAGGACCCCGAGTATGCATTGGACAAAACTTTGCAATGTTGGAAGCGAAAATGGCACTATCCATGATTTTGCAGAACTTCTCCTTCGAGCTTTCGACATCTTACACACATGCTCCTTTCCGTCTCATTACTCTTCAACCCCAATACGGTGCTCAGTTGATTCTGCACAAGCTGTATTTGGGCAGATTTTATACAAAAACAAGAATGGATCTAATGTACAACTCAGTTGCAGTGATTTGTGCTGTTGTAGTTGTACTTTGGGGATGGAAAGTGTTGAATTGGGTTTGGTTTAGGCCAAAGAAGCTTGAGAAATTGCTGAGACAACAAGGCCTCAAAGGAAATTCCTACAAGGTCTTGTTTGGAGATATTAAAAAAATCTCCTCAATGATCAAAGAAGCCAAATCCAAACCCATCAATATCTCCAGTGATATAGCGCCACGTGTCATGCCTTGGATCATTGATTCCATCCATAACTATGGTAAGAATTGTTTCTTATGGATTGGGACAATACCAAGGGTGTACATTATGGACCCTGATCTTGTTAGAGAAGTGTTGCATAATCATGACATCTTTAGAAAGCCCAATGCAAATCCAGCAATCAAGAAATTGTCAAATGGGCTATTAACCCATGAGGGGGAGAAATGGGCCAAACACAGGAAAATCATAAACCCTGCTTTCCATGTTGAGAAATTGAAGCTTATGCTACCAGCGTTTTACTTGAGTTGTAGTGAGCTCGTGAGTAAATGGGATGAAATGATTTCAACAAAGGGGTCATGCGAGTTGGATGTATGGCCTTATCTAGAAACTTTAACTAGCGATGTAATTTCGCGTACAGCTTTTGGCAGTAGTTATGAAGAAGGAAGAAAAATATTTCAACTTCAAAAAGAACAAGCTGAGCTTGTAATCCAAGCTGCAATATCCCTTTACTTCCCGGGATTGAGGTAG

Network for GWHGAAZE001850

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	11	218	1.90E-55
PF00067.23	p450	339	475	1.70E-17
PF01535.21	PPR	7	36	2.80E-06
PF01535.21	PPR	40	65	0.0026

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.356
	SRR3591706	second leaf	8.800
	SRR3591707	mature leaf	20.671
	SRR3591708	Shoot apex	3.745
	SRR3591709	Stem	7.410
	SRR3591710	White floral bud	5.143
	SRR3591711	White flower	6.455
	SRR3591712	Green floral bud	3.075
	SRR3591713	Yellow flower	4.847
SRP173429	SRR8316895	Juvenile bud stage	5.417
	SRR8316896	Juvenile bud stage	5.049
	SRR8316897	Juvenile bud stage	2.853
	SRR8316894	Third green stage	1.376
	SRR8316900	Third green stage	5.354
	SRR8316901	Third green stage	6.732
	SRR8316898	Complete white stage	4.002
	SRR8316899	Complete white stage	16.000
	SRR8316903	Complete white stage	5.760
	SRR8316902	Silver flowering stage	5.689
	SRR8316904	Silver flowering stage	7.373
	SRR8316905	Silver flowering stage	2.854
	SRR8316906	Gold flowering stage	21.109
	SRR8316907	Gold flowering stage	11.359
	SRR8316908	Gold flowering stage	20.260
SRP132670	SRR6706286	Control	1.837
	SRR6706287	Light intensity 50%	2.021
	SRR6706288	Light intensity 20%	1.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.581
	CNS0095593	Slightly white alabastrum(diploid) 2	5.330
	CNS0095594	Slightly white alabastrum(diploid) 3	6.822
	CNS0095595	Whole white alabastrum(diploid) 2	5.267
	CNS0095596	Whole white alabastrum(diploid) 3	2.515
	CNS0095597	Whole white alabastrum(diploid) 4	6.958
	CNS0095598	Silvery flower (diploied) 1	15.937
	CNS0095599	Silvery flower (diploied) 2	13.152
	CNS0095600	Silvery flower (diploied) 3	10.786
	CNS0095601	Golden flower (diploid) 1	13.761
	CNS0095602	Golden flower (diploid) 2	12.456
	CNS0095603	Golden flower (diploid) 3	11.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.986
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.280
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.951
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.560
	CNS0095610	Silvery flower (tetraploid) 1	14.342
	CNS0095611	Silvery flower (tetraploid) 2	13.320
	CNS0095612	Silvery flower (tetraploid) 3	4.864
	CNS0095613	Golden flower (tetraploid) 1	6.618
	CNS0095614	Golden flower (tetraploid) 2	12.513
	CNS0095615	Golden flower (tetraploid) 3	3.819
CRA001975	CRR073297	Stem 1	1.756
	CRR073298	Stem 2	2.125
	CRR073299	Stem 3	1.284
	CRR073300	Leaf 1	1.044
	CRR073301	Leaf 2	1.962
	CRR073302	Leaf 3	0.934
	CRR073303	Juvenile bud 1	0.954
	CRR073304	Juvenile bud 2	1.066
	CRR073305	Juvenile bud 3	0.894
	CRR073306	Third green 1	0.592
	CRR073307	Third green 2	0.443
	CRR073308	Third green 3	0.332
	CRR073309	Second white 1	0.852
	CRR073310	Second white 2	1.914
	CRR073311	Second white 3	0.777
	CRR073312	Silver flowering 1	0.840
	CRR073313	Silver flowering 2	0.306
	CRR073314	Silver flowering 3	0.667
	CRR073315	Gold flowering 1	12.260
	CRR073316	Gold flowering 2	13.498
	CRR073317	Gold flowering 3	6.873
	CRR073318	Tawny withering 1	10.722
	CRR073319	Tawny withering 2	12.639
	CRR073320	Tawny withering 3	5.699