Detail information of GWHGAAZE001820


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011082926.14.4075E-165PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 24-like isoform X1 [Sesamum indicum]
COGYP_761292.13E-13putative licheninase
Swissprottr|Q38911|XTH15_ARATH3E-135Probable xyloglucan endotransglucosylase/hydrolase protein 15 (Precursor)
trEMBLtr|B9H805|B9H805_POPTR4E-160Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}
TAIR10AT4G14130.11E-103xyloglucan endotransglucosylase/hydrolase 15

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6217673462177836-
GWHAAZE00000001mRNA6217673462177836-
GWHAAZE00000001exon6217673462177136-
GWHAAZE00000001exon6217726062177453-
GWHAAZE00000001exon6217757062177836-
GWHAAZE00000001CDS6217757062177836-
GWHAAZE00000001CDS6217726062177453-
GWHAAZE00000001CDS6217673462177136-
Transcript Sequence

Network for GWHGAAZE001820

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00722.22Glyco_hydro_16262062.50E-60
PF06955.13XET_C2392821.10E-19
PF00295.18Glyco_hydro_281194491.60E-105
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01184E3.2.1.15 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0010411biological_processxyloglucan metabolic process
GO:0042546biological_processcell wall biogenesis
GO:0006073biological_processcellular glucan metabolic process
GO:0005618cellular_componentcell wall
GO:0048046cellular_componentapoplast
GO:0004650molecular_functionpolygalacturonase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.162
SRR3591706second leaf0.193
SRR3591707mature leaf0.049
SRR3591708Shoot apex1.702
SRR3591709Stem33.792
SRR3591710White floral bud5.248
SRR3591711White flower5.945
SRR3591712Green floral bud1.179
SRR3591713Yellow flower4.020
SRP173429 SRR8316895Juvenile bud stage 1.283
SRR8316896Juvenile bud stage 0.475
SRR8316897Juvenile bud stage 24.156
SRR8316894Third green stage 1.337
SRR8316900Third green stage 3.496
SRR8316901Third green stage 5.660
SRR8316898Complete white stage 0.121
SRR8316899Complete white stage 5.677
SRR8316903Complete white stage 0.195
SRR8316902Silver flowering stage2.446
SRR8316904Silver flowering stage0.628
SRR8316905Silver flowering stage0.503
SRR8316906Gold flowering stage 0.770
SRR8316907Gold flowering stage 2.058
SRR8316908Gold flowering stage 12.787
SRP132670SRR6706286Control2.211
SRR6706287Light intensity 50%3.124
SRR6706288Light intensity 20%1.066
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.412
CNS0095593Slightly white alabastrum(diploid) 22.614
CNS0095594Slightly white alabastrum(diploid) 32.019
CNS0095595Whole white alabastrum(diploid) 21.148
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.735
CNS0095598Silvery flower (diploied) 113.742
CNS0095599Silvery flower (diploied) 24.592
CNS0095600Silvery flower (diploied) 310.229
CNS0095601Golden flower (diploid) 19.160
CNS0095602Golden flower (diploid) 26.356
CNS0095603Golden flower (diploid) 36.416
CNS0095604Slightly white alabastrum(tetraploid) 10.520
CNS0095605Slightly white alabastrum(tetraploid) 20.129
CNS0095606Slightly white alabastrum(tetraploid) 30.392
CNS0095607Whole white alabastrum(tetraploid) 10.328
CNS0095608Whole white alabastrum(tetraploid) 20.052
CNS0095609Whole white alabastrum(tetraploid) 30.422
CNS0095610Silvery flower (tetraploid) 10.323
CNS0095611Silvery flower (tetraploid) 20.037
CNS0095612Silvery flower (tetraploid) 34.316
CNS0095613Golden flower (tetraploid) 12.429
CNS0095614Golden flower (tetraploid) 20.276
CNS0095615Golden flower (tetraploid) 30.428
CRA001975CRR073297Stem 11.451
CRR073298Stem 20.906
CRR073299Stem 32.363
CRR073300Leaf 12.090
CRR073301Leaf 22.698
CRR073302Leaf 32.487
CRR073303Juvenile bud 11.951
CRR073304Juvenile bud 22.548
CRR073305Juvenile bud 36.061
CRR073306Third green 17.027
CRR073307Third green 214.548
CRR073308Third green 38.867
CRR073309Second white 11.193
CRR073310Second white 22.600
CRR073311Second white 32.924
CRR073312Silver flowering 17.789
CRR073313Silver flowering 23.919
CRR073314Silver flowering 32.707
CRR073315Gold flowering 17.142
CRR073316Gold flowering 224.963
CRR073317Gold flowering 35.344
CRR073318Tawny withering 19.601
CRR073319Tawny withering 27.735
CRR073320Tawny withering 35.790