Gene detail

Detail information of GWHGAAZE001801

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010063537.1	0	PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic-like [Eucalyptus grandis]
COG	YP_001515254.1	1E-119	3-isopropylmalate dehydrogenase
Swissprot	tr\|P29102\|LEU3_BRANA	0	3-isopropylmalate dehydrogenase, chloroplastic (Precursor)
trEMBL	tr\|A0A059BX01\|A0A059BX01_EUCGR	0	3-isopropylmalate dehydrogenase {ECO:0000256\|RuleBase:RU004445}
TAIR10	AT5G14200.1	6E-86	isopropylmalate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	61705559	61715569	+
GWHAAZE00000001	mRNA	61705559	61715569	+
GWHAAZE00000001	exon	61705559	61705784	+
GWHAAZE00000001	exon	61706064	61706193	+
GWHAAZE00000001	exon	61706288	61706466	+
GWHAAZE00000001	exon	61706941	61707025	+
GWHAAZE00000001	exon	61708190	61708332	+
GWHAAZE00000001	exon	61709094	61709185	+
GWHAAZE00000001	exon	61710066	61710152	+
GWHAAZE00000001	exon	61710557	61710730	+
GWHAAZE00000001	exon	61713391	61713507	+
GWHAAZE00000001	exon	61713643	61713750	+
GWHAAZE00000001	exon	61714765	61714818	+
GWHAAZE00000001	exon	61714900	61715052	+
GWHAAZE00000001	exon	61715415	61715569	+
GWHAAZE00000001	CDS	61705559	61705784	+
GWHAAZE00000001	CDS	61706064	61706193	+
GWHAAZE00000001	CDS	61706288	61706466	+
GWHAAZE00000001	CDS	61706941	61707025	+
GWHAAZE00000001	CDS	61708190	61708332	+
GWHAAZE00000001	CDS	61709094	61709185	+
GWHAAZE00000001	CDS	61710066	61710152	+
GWHAAZE00000001	CDS	61710557	61710730	+
GWHAAZE00000001	CDS	61713391	61713507	+
GWHAAZE00000001	CDS	61713643	61713750	+
GWHAAZE00000001	CDS	61714765	61714818	+
GWHAAZE00000001	CDS	61714900	61715052	+
GWHAAZE00000001	CDS	61715415	61715495	+
GWHAAZE00000001	three_prime_UTR	61715496	61715569	+

Transcript Sequence
>GWHTAAZE001805 ATGGCAATGGCGGCATCTATGCAATTTAGTGTCAGGACCTTTAAACCCCAACAACAGCAATATCATTTATGCAAACACAAGCACTACCCTGGTCAAGCTATGATCCGCTGCTCCACCAACTCACCCACTAAACACTATTCCATCACTCTACTTCCCGGCGATGGCATTGGACCTGAAGTCATGTCCGTTGCTAAAAGCGTCCTCAACCTCACTGCGTCTCTTGAAGGGATTGAATTGGGGTTTAAGGAGATGCCTGTGGGCGGGGCTGCATTGGATTTGACTGGAGTTCCATTACCTGAGGAGACCCTTTCTGCTGCAAAGCAATCTGATGGAGTTCTACTTGCAGCTGTTGGAGGTTACAAGTGGGATAATAATGAAAAAAATTTGAGGCCCGAGACTGCATTGCTTCATCTTCGAGGGGAACTGAAGGTCTTCGCAAATTTGAGGCCAGCTACTGTTCTTCCACAAGTAATCCTTTTCTTCTGCCAACATCTGCTTTATATAGAATGTGATGTTAGTAACGATTGCATAGCAGTACTTGATAAGGGCACTTTCAGTGGTCCATGGAAGAGTATTTCTCAAGGGTTGGAGTCCTTTGTTTCACTCTTGGTTTCTAGTGGTCTTCCTAACATTATGATGTTAATTTACAATTTTAATTGCCCATTCTCCAAATTTCACCATTTTCAGTTAGTGGATGCGTCAACATTGAAGAAAGAGGTTGCTGAGGGTGTTGACTTAATGGTCGTAAGGGAGCTTACAGGAGGTATTTATTTTGGGAAACCGAGGGGTGTTAGCACAAATGAGAATGGTGAGGAAATTGGTTTCAATACTGAGGTGTATGCAGCATATGAGGTAATTGATCGCATTGCTCGAGTTGCATTTGAGACTGCCCGAAAGCGTCGTGGAAAACTCTGTTCCGTTGACAAGGCAAATGTCTTGGAGTGGGCTACAGCTATTGTGTCGGCTTTGGTTGTATCTGTGTTGGGTCTTGTTGGGCGTGCCTTGTTTGCTTTATGTCCTGCTTGCATCGGGACAAGCCGCTGTGTTCGTTGGACCAGATCGGGGTTCTTAGGGGTTATCGGGTCCTTTCGCATTATAACTTGTAATTTTTTAAAGGCATCAATGCTCTGGAGGAAGAGAGTAACGGCAATAGCCTCTGAGTACCCTGATGTTGAACTTTCTCACATGTACGTTGACAATGCAGCAATGCAGCTCGTTCGTAATCCAAAACAGTTTGATACAATTGTAACAAACAATATATTTGGTGATATTTTATCGGATGAGGCTTCGATGATTACTGGTAGTATTGGGATGCTTCCATCAGCTAGTCTTGGTGAATCGGGGCCTGGTCTATTTGAACCCATTCATGGTTCTGCACCAGATATTGCTGGACAGGATAAAGCAAACCCATTGGCAACAATACTAAGCGCCGCCATGCTTTTGAAGTACGGGCTAGGAGAAGAGAAGGCTGCCTTGAGAATTGAGAGTGCAGTCATGGATACTTTGGATAGGGGGTTTCGAACTGGTGACATCTACTCTCCCGGAAATAAATTGGTAGGATGCAAGGAGATGGGTGAACAGGTGCTCGGGTCCATAGAAGACCATAAAGTTGCTGCGGCTCTGGTATGAATTGAAAATTCTCCATTCGCATCGTAACAAGAAAAAACACAAAAGCCTTACTGATTTCCCTAGTGAAGCGTTGT

Network for GWHGAAZE001801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00180.21	Iso_dh	48	156	5.40E-28
PF00180.21	Iso_dh	229	316	4.50E-24
PF00180.21	Iso_dh	369	528	6.80E-68
PF07002.17	Copine	112	331	3.70E-72
PF13920.7	zf-C3HC4_3	394	435	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K00052	leuB, IMDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009098	biological_process	leucine biosynthetic process
GO:0000287	molecular_function	magnesium ion binding
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	molecular_function	NAD binding
GO:0003862	molecular_function	3-isopropylmalate dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.018
	SRR3591706	second leaf	59.087
	SRR3591707	mature leaf	43.675
	SRR3591708	Shoot apex	68.660
	SRR3591709	Stem	43.477
	SRR3591710	White floral bud	35.094
	SRR3591711	White flower	47.178
	SRR3591712	Green floral bud	42.906
	SRR3591713	Yellow flower	43.425
SRP173429	SRR8316895	Juvenile bud stage	35.121
	SRR8316896	Juvenile bud stage	37.244
	SRR8316897	Juvenile bud stage	22.373
	SRR8316894	Third green stage	17.478
	SRR8316900	Third green stage	64.686
	SRR8316901	Third green stage	55.224
	SRR8316898	Complete white stage	16.822
	SRR8316899	Complete white stage	58.666
	SRR8316903	Complete white stage	32.688
	SRR8316902	Silver flowering stage	15.668
	SRR8316904	Silver flowering stage	18.391
	SRR8316905	Silver flowering stage	8.886
	SRR8316906	Gold flowering stage	24.585
	SRR8316907	Gold flowering stage	29.640
	SRR8316908	Gold flowering stage	35.612
SRP132670	SRR6706286	Control	56.271
	SRR6706287	Light intensity 50%	59.023
	SRR6706288	Light intensity 20%	60.971
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.770
	CNS0095593	Slightly white alabastrum(diploid) 2	33.430
	CNS0095594	Slightly white alabastrum(diploid) 3	28.389
	CNS0095595	Whole white alabastrum(diploid) 2	27.604
	CNS0095596	Whole white alabastrum(diploid) 3	27.993
	CNS0095597	Whole white alabastrum(diploid) 4	22.792
	CNS0095598	Silvery flower (diploied) 1	23.746
	CNS0095599	Silvery flower (diploied) 2	25.334
	CNS0095600	Silvery flower (diploied) 3	35.248
	CNS0095601	Golden flower (diploid) 1	24.088
	CNS0095602	Golden flower (diploid) 2	35.324
	CNS0095603	Golden flower (diploid) 3	31.945
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.443
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.735
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.883
	CNS0095610	Silvery flower (tetraploid) 1	42.190
	CNS0095611	Silvery flower (tetraploid) 2	43.187
	CNS0095612	Silvery flower (tetraploid) 3	33.002
	CNS0095613	Golden flower (tetraploid) 1	22.276
	CNS0095614	Golden flower (tetraploid) 2	38.597
	CNS0095615	Golden flower (tetraploid) 3	16.087
CRA001975	CRR073297	Stem 1	59.949
	CRR073298	Stem 2	57.536
	CRR073299	Stem 3	65.385
	CRR073300	Leaf 1	72.401
	CRR073301	Leaf 2	71.690
	CRR073302	Leaf 3	68.885
	CRR073303	Juvenile bud 1	74.763
	CRR073304	Juvenile bud 2	66.934
	CRR073305	Juvenile bud 3	89.727
	CRR073306	Third green 1	22.166
	CRR073307	Third green 2	13.182
	CRR073308	Third green 3	16.754
	CRR073309	Second white 1	32.542
	CRR073310	Second white 2	21.724
	CRR073311	Second white 3	21.620
	CRR073312	Silver flowering 1	24.292
	CRR073313	Silver flowering 2	32.766
	CRR073314	Silver flowering 3	25.967
	CRR073315	Gold flowering 1	46.190
	CRR073316	Gold flowering 2	60.559
	CRR073317	Gold flowering 3	47.509
	CRR073318	Tawny withering 1	63.410
	CRR073319	Tawny withering 2	48.064
	CRR073320	Tawny withering 3	60.335