Gene detail

Detail information of GWHGAAZE001784

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009589812.1	4.5499E-147	PREDICTED: exopolygalacturonase-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q6H9K0\|PGLR2_PLAAC	5E-108	Exopolygalacturonase (Precursor; Fragment)
trEMBL	tr\|M1BGK6\|M1BGK6_SOLTU	2E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400044717}
TAIR10	AT2G33160.1	4E-87	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60791908	60795224	+
GWHAAZE00000001	mRNA	60791908	60795224	+
GWHAAZE00000001	exon	60791908	60792192	+
GWHAAZE00000001	exon	60794084	60794599	+
GWHAAZE00000001	exon	60794997	60795224	+
GWHAAZE00000001	CDS	60791908	60792192	+
GWHAAZE00000001	CDS	60794084	60794599	+
GWHAAZE00000001	CDS	60794997	60795224	+

Transcript Sequence
>GWHTAAZE001788 ATGCAAGTGGAAGGGGAGGAGCAGAGTTTTGATCCCGTGGGGGAAGTACATGGTAGGTTCGGTGGTATTTGTGGGGCCATGCGAGGGATCAATGGCATTTCTGATAAAAGGAACTCTCCTCAGGCTCCCACTAAACCTTCTTTGTTCTTTACGGACCATTGGATCAGCTTCAGATATGTTGACCAATTAGTAGTCAAAGGTGGGGGCTACTTGGATGGCCAAGGTTCTTCTGCTTGGCGATATAATGATTGCGTCAAAAATCCCCAATGCAAGCCTCTCCCTATTACAATGCGTTTCGATTTCGTGACAAATTCGCGGGTAAAATATCTGCGATCAATCAATAGCAAAAATGCGCATTTCAATCTTTTCGGTTGCAACAACATGAGCATGAGTTACATTAGAATCACTGCCCCGGGTGAAAGCCCTAACACCGATGGAATTCACATTGGATGCTCAAGCAACATCAGCATTGCACATTCAGTAATAGGCACCGGTGATGATTGCATATCCATGGTGTCCGGTAGTGAAAACATCGACATTTCCGATGTTTATTGTGGGCCTGGGCATGGGATCAGTATCGGGAGCCTAGGAAAGGGCGGAAACAAAGAACATGTTGCCGGTATAACGATCAGAAATTGCACTTTTAACGGTACTCAAAATGGTGTGAGGATAAAAACTTGGGCGCCTTCTCTACCGGCCTTTGCTTCGGATTTTACATTTGAGAATATTTCGATGATCAATGCGAGTAATCCTATAGTTATCGATCAACAGTATTGCCCGATACCTCCATGTGATGATAAGGCTCAATCTGGTGTACAAATTAGCAATGTGACATTTAAAGATATAAGGGGGGTATCAAGTACAAAAGTTGCAGTAACAATGAAATGCAGCCAAGTGGCGCCATGTAAAGATGTGAGGCTCGAGAATATAAATTTGGCATACAATGGGGTTGGAGGACCGGCAAGTTCTTGGTGTTCCAATGTCAAAGGCCAATCTTATGGCAAACAGTTACCTCCTGGTTGTCTTTAA

Network for GWHGAAZE001784

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	51	329	1.50E-90
PF00022.20	Actin	3	432	1.70E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	1.058
	SRR3591707	mature leaf	0.201
	SRR3591708	Shoot apex	0.394
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.085
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.319
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.423
	SRR8316903	Complete white stage	0.008
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.067
	SRR8316905	Silver flowering stage	0.133
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.218
	SRR6706287	Light intensity 50%	0.086
	SRR6706288	Light intensity 20%	0.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.081
	CNS0095593	Slightly white alabastrum(diploid) 2	0.866
	CNS0095594	Slightly white alabastrum(diploid) 3	0.126
	CNS0095595	Whole white alabastrum(diploid) 2	0.231
	CNS0095596	Whole white alabastrum(diploid) 3	0.335
	CNS0095597	Whole white alabastrum(diploid) 4	0.264
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.007
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.261
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.108
CRA001975	CRR073297	Stem 1	0.061
	CRR073298	Stem 2	0.154
	CRR073299	Stem 3	0.164
	CRR073300	Leaf 1	0.064
	CRR073301	Leaf 2	0.033
	CRR073302	Leaf 3	0.354
	CRR073303	Juvenile bud 1	0.042
	CRR073304	Juvenile bud 2	0.129
	CRR073305	Juvenile bud 3	0.498
	CRR073306	Third green 1	0.098
	CRR073307	Third green 2	0.268
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.110
	CRR073314	Silver flowering 3	0.197
	CRR073315	Gold flowering 1	0.077
	CRR073316	Gold flowering 2	1.526
	CRR073317	Gold flowering 3	1.296
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000