Gene detail

Detail information of GWHGAAZE001780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007048869.1	0	Calcium-activated outward-rectifying potassium channel, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SVV6\|KCO6_ARATH	9E-107	Two-pore potassium channel 3
trEMBL	tr\|A0A061DKR2\|A0A061DKR2_THECC	0	Calcium-activated outward-rectifying potassium channel, putative isoform 1 {ECO:0000313\|EMBL:EOX93027.1}
TAIR10	AT4G18160.1	3E-89	Ca2+ activated outward rectifying K+ channel 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60570124	60573272	-
GWHAAZE00000001	mRNA	60570124	60573272	-
GWHAAZE00000001	exon	60570124	60570304	-
GWHAAZE00000001	exon	60572239	60573272	-
GWHAAZE00000001	CDS	60572239	60573272	-
GWHAAZE00000001	CDS	60570124	60570304	-

Transcript Sequence
>GWHTAAZE001784 ATGGATCAGCCTCTCTTAACAACAGTTGTAGTAGCAGAAACATCCAACAAATCCCCATTGAAGAAAGAAAAATCGCCTTCTTTCATCGATATCACCTCGTCTTTGCAAGAATCAACCAATCATCTTGTCAATCCAGACTCCATTTTCCCTATCCTCAGAACACCCCGAAACTCGTCGTCCTTTCCAAACATATTAGCCAATTTCAACAAGCAGAGGAAACACAAAAGGCAGTCCCACTCGGCTCCTTCAATCACAACCCAAGAAAAAGAACCTTTTGACCATTCTTTTCAATTAAGACCTCCCCTAAAATCAACCCCTTCAATCGTTCAGCTAGCATTCATCGGTGTAGTTATATACTGTATAACCGGCATCGCCATGTACTTACTCCAATACAAGAGTTTCAGAGGCAAAAAAACCTTGAAGCCAGTCGATGCCTTGTATTTTACTGTTGTGACACTTTGTACCATAGGCTATGGCGATATAGTGCCCGACTCGACATTTGCAAAGTTGTTCACTTGTGCTTTCATCTTAGTGGGTTTCGGGTTTGTGGACATATTGCTCAACGGGTTGGTTACCTACATTCTTGATGGGCAAGAGGCAGTGTTGTTGAGTACAATTGATATGAACCGATTCAATACAGTGGCACGCACGTATATGATAGATACAGTGAAGGGGAGAATGAGGATAAGAATAAAAGTGGGACTGGCTTTGGCAGTTGTTATTGGTTGTATAGCTATAGGAACAGTTGCAGTGCATATTTTGGAGGGGATGAGTTGGGTTGACAGTTTTTATCTCTCAGTTACGTCAGTGACGACTGTCGGTTATGGCGACTATGCCTTCACTACAGTTATGGGTAGGTGTTTTGCGATTATTTGGCTTTTGGTAAGCACGTTGGCTGTGGCTCGGGCTTTTCTGTATTTGACAGAGTTGAGAATTGACAAGAGGAATCGGACAATGGCCAAATGGATTCTTCAGAAGAAAATGACACTTGGGGATTTAGTGGCCGCAGATCTTGATCGCGATGGATCAATCAGTAAATCAGAGTTCGTCATATACAAGCTAAAGGAAATGGGAAGAATCGCAGAAAAAGACATCCAGCAGATCTGCAACCAATTCGATATGTTAGACAACAGCAATTGCGGAAAACTTACTGTCGCTGATCTGATGCAAAGTGACACCGTTGATCCCAAAGCTAATTTCCAAACTGGAACATAA

Network for GWHGAAZE001780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07885.17	Ion_trans_2	116	194	5.80E-14
PF07885.17	Ion_trans_2	239	307	5.80E-13
PF03283.14	PAE	3	114	5.20E-48
PF03283.14	PAE	149	378	6.60E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0071805	biological_process	potassium ion transmembrane transport
GO:0016020	cellular_component	membrane
GO:0016787	molecular_function	hydrolase activity
GO:0005267	molecular_function	potassium channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.633
	SRR3591706	second leaf	1.873
	SRR3591707	mature leaf	1.629
	SRR3591708	Shoot apex	3.117
	SRR3591709	Stem	3.830
	SRR3591710	White floral bud	4.976
	SRR3591711	White flower	2.444
	SRR3591712	Green floral bud	4.879
	SRR3591713	Yellow flower	1.908
SRP173429	SRR8316895	Juvenile bud stage	2.585
	SRR8316896	Juvenile bud stage	3.006
	SRR8316897	Juvenile bud stage	0.983
	SRR8316894	Third green stage	1.208
	SRR8316900	Third green stage	2.375
	SRR8316901	Third green stage	2.226
	SRR8316898	Complete white stage	0.816
	SRR8316899	Complete white stage	2.147
	SRR8316903	Complete white stage	2.080
	SRR8316902	Silver flowering stage	0.346
	SRR8316904	Silver flowering stage	0.396
	SRR8316905	Silver flowering stage	0.282
	SRR8316906	Gold flowering stage	1.074
	SRR8316907	Gold flowering stage	1.010
	SRR8316908	Gold flowering stage	0.675
SRP132670	SRR6706286	Control	1.510
	SRR6706287	Light intensity 50%	1.648
	SRR6706288	Light intensity 20%	1.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.715
	CNS0095593	Slightly white alabastrum(diploid) 2	4.091
	CNS0095594	Slightly white alabastrum(diploid) 3	7.674
	CNS0095595	Whole white alabastrum(diploid) 2	4.655
	CNS0095596	Whole white alabastrum(diploid) 3	5.148
	CNS0095597	Whole white alabastrum(diploid) 4	6.907
	CNS0095598	Silvery flower (diploied) 1	5.406
	CNS0095599	Silvery flower (diploied) 2	5.154
	CNS0095600	Silvery flower (diploied) 3	2.532
	CNS0095601	Golden flower (diploid) 1	4.015
	CNS0095602	Golden flower (diploid) 2	2.946
	CNS0095603	Golden flower (diploid) 3	3.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.845
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.549
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.175
	CNS0095610	Silvery flower (tetraploid) 1	1.819
	CNS0095611	Silvery flower (tetraploid) 2	1.744
	CNS0095612	Silvery flower (tetraploid) 3	2.437
	CNS0095613	Golden flower (tetraploid) 1	1.434
	CNS0095614	Golden flower (tetraploid) 2	1.176
	CNS0095615	Golden flower (tetraploid) 3	0.543
CRA001975	CRR073297	Stem 1	2.748
	CRR073298	Stem 2	2.339
	CRR073299	Stem 3	2.076
	CRR073300	Leaf 1	1.406
	CRR073301	Leaf 2	1.582
	CRR073302	Leaf 3	1.154
	CRR073303	Juvenile bud 1	0.500
	CRR073304	Juvenile bud 2	0.712
	CRR073305	Juvenile bud 3	1.531
	CRR073306	Third green 1	0.465
	CRR073307	Third green 2	1.474
	CRR073308	Third green 3	0.292
	CRR073309	Second white 1	0.242
	CRR073310	Second white 2	0.305
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.031
	CRR073315	Gold flowering 1	1.861
	CRR073316	Gold flowering 2	1.584
	CRR073317	Gold flowering 3	0.751
	CRR073318	Tawny withering 1	0.744
	CRR073319	Tawny withering 2	1.799
	CRR073320	Tawny withering 3	1.829