Gene detail

Detail information of GWHGAAZE001779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006360006.1	4.86131E-82	PREDICTED: uncharacterized protein LOC102599751 [Solanum tuberosum]
trEMBL	tr\|M1BWY3\|M1BWY3_SOLTU	2E-82	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054832}
TAIR10	AT1G06510.1	9E-50	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60555454	60560005	+
GWHAAZE00000001	mRNA	60555454	60560005	+
GWHAAZE00000001	exon	60555454	60555630	+
GWHAAZE00000001	exon	60557324	60557542	+
GWHAAZE00000001	exon	60559469	60560005	+
GWHAAZE00000001	CDS	60555454	60555630	+
GWHAAZE00000001	CDS	60557324	60557542	+
GWHAAZE00000001	CDS	60559469	60560005	+

Transcript Sequence
>GWHTAAZE001783 AAATTGAAGAGACAGAGAGGGACAGGGCAGGGCTCAGGCCGGGGGCTACCACAAGGCGAAGCAGCAGAAAGGCGACAGATTAACCCTGAACATATACGAGAGAGGGATGTGAGAGCACTACAAGAGGCGGCAATGCAGTGGAGACAGGAGGAGGGAAGAATGGTGGTGCTGTGGGTGCACATTTTTCTTGCTTCAGGTAGTAATGCAAGATTGAGGCTCATGCGGTTGTCTGAAGCGGCAGAGAAACTTCAACGACAGGCACTTATTAGTGTTCAAACTGGAAGGGAAAATGATGCAAGGGATCTACTTTTCCAAAAGAAGAAGGTTATGCAAGCTTTGGAGAAGACAAAGAGTCGTATTGAATTGCTTGATGAGCTTTTGGCACAGCTTAATAAGGCAATAACTATGAAGGAAACTCAGCTAGTTGGAACTGTTGCTCAAGACGTTGAGATTACCAGGGAAGATGCTAGCACTCAAGTTAGGATCGTCTCTCCAAAGGAGGAAGGTGCTGCAAATTCAAATGAAAATGGAGACTCCAATGCTAATTCCATTAAACTAAGTGAGGATCAAGAAATGCAAGTAAATGCAGAAGGTCCATCTGACCTACCTAATGGTAACGAGTCAAATAATCCTGAAGTATCTCTGATTTCGCCAATTTGGAGCGAAAACGATGCGATCAGTTGCTTAAAGGGAATATCCTCCTTTGAGAACTTTTTGGAACATCTTGATAAACAGCTGAGCAAAATCGAAGCAGAACTTGCCACAGTTTTAAGGTTCTCAACGTTGGTATTGGACGGCGAAGAGAAGCCTAAAAATTCCAAGGTGCAACATACAATGGAAATTTTTGAGGGTGTTTGTCGCATTAGAGGGAGGTATTGTATAAACCAACCCAATGTTCCTTGCTTATCCTTTGTTAGACTGAAAAAACAATGA

Network for GWHGAAZE001779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	56	142	7.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.732
	SRR3591706	second leaf	9.604
	SRR3591707	mature leaf	10.972
	SRR3591708	Shoot apex	6.997
	SRR3591709	Stem	5.561
	SRR3591710	White floral bud	5.152
	SRR3591711	White flower	7.245
	SRR3591712	Green floral bud	10.787
	SRR3591713	Yellow flower	6.429
SRP173429	SRR8316895	Juvenile bud stage	4.772
	SRR8316896	Juvenile bud stage	5.954
	SRR8316897	Juvenile bud stage	4.482
	SRR8316894	Third green stage	3.725
	SRR8316900	Third green stage	9.882
	SRR8316901	Third green stage	8.269
	SRR8316898	Complete white stage	2.750
	SRR8316899	Complete white stage	10.111
	SRR8316903	Complete white stage	3.955
	SRR8316902	Silver flowering stage	2.587
	SRR8316904	Silver flowering stage	2.735
	SRR8316905	Silver flowering stage	1.152
	SRR8316906	Gold flowering stage	4.363
	SRR8316907	Gold flowering stage	2.968
	SRR8316908	Gold flowering stage	11.019
SRP132670	SRR6706286	Control	4.381
	SRR6706287	Light intensity 50%	6.027
	SRR6706288	Light intensity 20%	6.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.860
	CNS0095593	Slightly white alabastrum(diploid) 2	5.031
	CNS0095594	Slightly white alabastrum(diploid) 3	4.920
	CNS0095595	Whole white alabastrum(diploid) 2	4.123
	CNS0095596	Whole white alabastrum(diploid) 3	3.554
	CNS0095597	Whole white alabastrum(diploid) 4	3.133
	CNS0095598	Silvery flower (diploied) 1	5.666
	CNS0095599	Silvery flower (diploied) 2	3.966
	CNS0095600	Silvery flower (diploied) 3	5.439
	CNS0095601	Golden flower (diploid) 1	4.529
	CNS0095602	Golden flower (diploid) 2	5.826
	CNS0095603	Golden flower (diploid) 3	4.959
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.278
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.317
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.006
	CNS0095610	Silvery flower (tetraploid) 1	5.664
	CNS0095611	Silvery flower (tetraploid) 2	6.299
	CNS0095612	Silvery flower (tetraploid) 3	5.706
	CNS0095613	Golden flower (tetraploid) 1	2.046
	CNS0095614	Golden flower (tetraploid) 2	4.052
	CNS0095615	Golden flower (tetraploid) 3	3.810
CRA001975	CRR073297	Stem 1	6.974
	CRR073298	Stem 2	7.258
	CRR073299	Stem 3	4.693
	CRR073300	Leaf 1	6.721
	CRR073301	Leaf 2	4.414
	CRR073302	Leaf 3	4.607
	CRR073303	Juvenile bud 1	4.501
	CRR073304	Juvenile bud 2	2.427
	CRR073305	Juvenile bud 3	4.943
	CRR073306	Third green 1	2.671
	CRR073307	Third green 2	1.858
	CRR073308	Third green 3	1.195
	CRR073309	Second white 1	0.928
	CRR073310	Second white 2	1.725
	CRR073311	Second white 3	1.304
	CRR073312	Silver flowering 1	0.372
	CRR073313	Silver flowering 2	0.189
	CRR073314	Silver flowering 3	1.293
	CRR073315	Gold flowering 1	10.487
	CRR073316	Gold flowering 2	15.373
	CRR073317	Gold flowering 3	7.565
	CRR073318	Tawny withering 1	4.796
	CRR073319	Tawny withering 2	4.663
	CRR073320	Tawny withering 3	3.289