Detail information of GWHGAAZE001720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011082955.10PREDICTED: citrate synthase, glyoxysomal [Sesamum indicum]
Swissprottr|P49299|CYSZ_CUCMA0Citrate synthase, glyoxysomal (Precursor)
trEMBLtr|W8SRJ8|W8SRJ8_TOBAC0Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}
TAIR10AT3G58750.10citrate synthase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5865739158668699-
GWHAAZE00000001mRNA5865739158668699-
GWHAAZE00000001exon5865739158657531-
GWHAAZE00000001exon5865804858658171-
GWHAAZE00000001exon5865827158658368-
GWHAAZE00000001exon5866125358661373-
GWHAAZE00000001exon5866150058661573-
GWHAAZE00000001exon5866180058661875-
GWHAAZE00000001exon5866225058662369-
GWHAAZE00000001exon5866248858662597-
GWHAAZE00000001exon5866270758662769-
GWHAAZE00000001exon5866319958663303-
GWHAAZE00000001exon5866460758664692-
GWHAAZE00000001exon5866729158667471-
GWHAAZE00000001exon5866845458668699-
GWHAAZE00000001CDS5866845458668699-
GWHAAZE00000001CDS5866729158667471-
GWHAAZE00000001CDS5866460758664692-
GWHAAZE00000001CDS5866319958663303-
GWHAAZE00000001CDS5866270758662769-
GWHAAZE00000001CDS5866248858662597-
GWHAAZE00000001CDS5866225058662369-
GWHAAZE00000001CDS5866180058661875-
GWHAAZE00000001CDS5866150058661573-
GWHAAZE00000001CDS5866125358661373-
GWHAAZE00000001CDS5865827158658368-
GWHAAZE00000001CDS5865804858658171-
GWHAAZE00000001CDS5865739158657531-
Transcript Sequence

Network for GWHGAAZE001720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00285.22Citrate_synt994673.50E-133
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01647CS, gltA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Glyoxylate and dicarboxylate metabolismmap00630

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0046912molecular_functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf116.734
SRR3591706second leaf43.602
SRR3591707mature leaf46.511
SRR3591708Shoot apex56.799
SRR3591709Stem91.447
SRR3591710White floral bud416.676
SRR3591711White flower413.827
SRR3591712Green floral bud148.299
SRR3591713Yellow flower762.509
SRP173429 SRR8316895Juvenile bud stage 55.028
SRR8316896Juvenile bud stage 88.652
SRR8316897Juvenile bud stage 33.090
SRR8316894Third green stage 40.285
SRR8316900Third green stage 149.939
SRR8316901Third green stage 132.363
SRR8316898Complete white stage 236.364
SRR8316899Complete white stage 185.783
SRR8316903Complete white stage 346.637
SRR8316902Silver flowering stage211.913
SRR8316904Silver flowering stage297.965
SRR8316905Silver flowering stage172.946
SRR8316906Gold flowering stage 489.861
SRR8316907Gold flowering stage 446.290
SRR8316908Gold flowering stage 288.031
SRP132670SRR6706286Control166.099
SRR6706287Light intensity 50%160.999
SRR6706288Light intensity 20%153.602
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1107.464
CNS0095593Slightly white alabastrum(diploid) 287.309
CNS0095594Slightly white alabastrum(diploid) 380.382
CNS0095595Whole white alabastrum(diploid) 291.461
CNS0095596Whole white alabastrum(diploid) 3103.330
CNS0095597Whole white alabastrum(diploid) 4104.786
CNS0095598Silvery flower (diploied) 1225.556
CNS0095599Silvery flower (diploied) 2265.013
CNS0095600Silvery flower (diploied) 3851.001
CNS0095601Golden flower (diploid) 1308.780
CNS0095602Golden flower (diploid) 2755.694
CNS0095603Golden flower (diploid) 3746.896
CNS0095604Slightly white alabastrum(tetraploid) 198.164
CNS0095605Slightly white alabastrum(tetraploid) 286.551
CNS0095606Slightly white alabastrum(tetraploid) 398.820
CNS0095607Whole white alabastrum(tetraploid) 189.340
CNS0095608Whole white alabastrum(tetraploid) 299.520
CNS0095609Whole white alabastrum(tetraploid) 3135.292
CNS0095610Silvery flower (tetraploid) 1613.563
CNS0095611Silvery flower (tetraploid) 2877.612
CNS0095612Silvery flower (tetraploid) 3796.878
CNS0095613Golden flower (tetraploid) 1673.050
CNS0095614Golden flower (tetraploid) 2711.049
CNS0095615Golden flower (tetraploid) 31142.683
CRA001975CRR073297Stem 1108.421
CRR073298Stem 2110.065
CRR073299Stem 3117.971
CRR073300Leaf 1145.142
CRR073301Leaf 2143.727
CRR073302Leaf 3153.396
CRR073303Juvenile bud 1177.819
CRR073304Juvenile bud 2252.611
CRR073305Juvenile bud 3214.435
CRR073306Third green 1323.354
CRR073307Third green 2253.048
CRR073308Third green 3262.913
CRR073309Second white 1612.767
CRR073310Second white 2384.149
CRR073311Second white 3366.164
CRR073312Silver flowering 1441.500
CRR073313Silver flowering 2510.013
CRR073314Silver flowering 3467.272
CRR073315Gold flowering 161.544
CRR073316Gold flowering 270.018
CRR073317Gold flowering 361.511
CRR073318Tawny withering 186.592
CRR073319Tawny withering 276.945
CRR073320Tawny withering 365.399