Detail information of GWHGAAZE001711


Functional Annotation

DatabaseOrthologsE valueAnnotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5846773058467975-
GWHAAZE00000001mRNA5846773058467975-
GWHAAZE00000001exon5846773058467975-
GWHAAZE00000001CDS5846773058467975-
Transcript Sequence

Network for GWHGAAZE001711

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N1652917.50E-46
PF02984.20Cyclin_C2944138.20E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.387
SRR3591706second leaf0.393
SRR3591707mature leaf0.465
SRR3591708Shoot apex1.308
SRR3591709Stem0.109
SRR3591710White floral bud0.797
SRR3591711White flower1.290
SRR3591712Green floral bud0.472
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.363
SRR8316897Juvenile bud stage 0.108
SRR8316894Third green stage 0.126
SRR8316900Third green stage 0.273
SRR8316901Third green stage 0.217
SRR8316898Complete white stage 0.154
SRR8316899Complete white stage 0.510
SRR8316903Complete white stage 0.208
SRR8316902Silver flowering stage0.249
SRR8316904Silver flowering stage0.305
SRR8316905Silver flowering stage0.200
SRR8316906Gold flowering stage 0.081
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.137
SRP132670SRR6706286Control0.328
SRR6706287Light intensity 50%0.533
SRR6706288Light intensity 20%0.603
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.375
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 31.684
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.781
CNS0095603Golden flower (diploid) 30.562
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.252
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.354
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.773
CNS0095615Golden flower (tetraploid) 30.185
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.103
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000