Gene detail

Detail information of GWHGAAZE001709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW84638.1	1.7755E-128	hypothetical protein EUGRSUZ_B01463 [Eucalyptus grandis]
Swissprot	tr\|Q9STY8\|HSD2_ARATH	1E-19	11-beta-hydroxysteroid dehydrogenase-like 2
trEMBL	tr\|A0A059D1M1\|A0A059D1M1_EUCGR	7E-129	Uncharacterized protein {ECO:0000313\|EMBL:KCW84638.1}
TAIR10	AT3G03330.1	1E-83	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58459592	58465997	+
GWHAAZE00000001	mRNA	58459592	58465997	+
GWHAAZE00000001	exon	58459592	58459742	+
GWHAAZE00000001	exon	58459839	58459987	+
GWHAAZE00000001	exon	58462237	58462275	+
GWHAAZE00000001	exon	58463679	58463771	+
GWHAAZE00000001	exon	58464087	58464185	+
GWHAAZE00000001	exon	58465018	58465119	+
GWHAAZE00000001	exon	58465766	58465849	+
GWHAAZE00000001	exon	58465968	58465997	+
GWHAAZE00000001	CDS	58459592	58459742	+
GWHAAZE00000001	CDS	58459839	58459987	+
GWHAAZE00000001	CDS	58462237	58462275	+
GWHAAZE00000001	CDS	58463679	58463771	+
GWHAAZE00000001	CDS	58464087	58464185	+
GWHAAZE00000001	CDS	58465018	58465119	+
GWHAAZE00000001	CDS	58465766	58465849	+
GWHAAZE00000001	CDS	58465968	58465997	+

Transcript Sequence
>GWHTAAZE001713 ATGTCCAATGTTCTTTTTAAACATATTTCGACTTATATGTTTGGATCTCTAGGGGAGTCGCTTGCCAAACAACTTGCAGGTTTGGGGGCCAAGCTGATTCTTTCTGCTAGAAATGAAGCTGAATTGGAGCGAGTTAAAAAGCAACTTAATGGTAAACATGCACCTGATGAAGTGATGATTTTACCTTTGGATTTGGCATCTGGGGAAGATACCCTCAGAGAGGCTGTGGAGAAAGCTGAGTCCTATTTTGGCAGCGCAGGTGTTGATTATATGATCCATAATGCAGCCTATGAACGCCCTAAAACAACAGCATTGGATGTCACTGAGGAGAGTCTTAAGGCTACTTTTGATGTAAATGTGTTGGGGCCGATATCTCTTACACGGTTGCTGGTGCCTTCCATGCTGAAGAGAGGGGAAGGACATTTAGTTGTGATGAGCAGTGCTGCTGGAAAGGCTCCAGCACCAGGTCAAGCCGTATATTCTGCTTCCAAATTTGCTGTAAATGGGTACTTTCATACGTTGCGTTCTGAGCTATGTCGGAAAGGAATTAAGGTGACAGTTGTTTGTCCTGGGCCGATAGCCGCACCAAATGCTACTGGAACAAGCATTGCAGAACAAAGGAACTCTGCCGAGAAGCGGGTGTCATCAGAGAGGTGTGCAGAGCTTACAATAATTGCTACAAGCCATGGTCTAAAGGAAGTTTGGATATCATATCAGACGTCAACTATAATGGAAAATCTTTTTTGA

Network for GWHGAAZE001709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	16	199	2.40E-42
PF03171.21	2OG-FeII_Oxy	112	192	4.80E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06892	F6H	Biosynthesis of secondary metabolites	map01110
K06892	F6H	Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.432
	SRR3591706	second leaf	11.847
	SRR3591707	mature leaf	15.111
	SRR3591708	Shoot apex	13.937
	SRR3591709	Stem	28.506
	SRR3591710	White floral bud	35.472
	SRR3591711	White flower	22.142
	SRR3591712	Green floral bud	29.083
	SRR3591713	Yellow flower	15.234
SRP173429	SRR8316895	Juvenile bud stage	18.260
	SRR8316896	Juvenile bud stage	24.727
	SRR8316897	Juvenile bud stage	9.179
	SRR8316894	Third green stage	11.325
	SRR8316900	Third green stage	25.219
	SRR8316901	Third green stage	28.742
	SRR8316898	Complete white stage	15.280
	SRR8316899	Complete white stage	39.947
	SRR8316903	Complete white stage	31.572
	SRR8316902	Silver flowering stage	13.930
	SRR8316904	Silver flowering stage	20.160
	SRR8316905	Silver flowering stage	10.039
	SRR8316906	Gold flowering stage	31.506
	SRR8316907	Gold flowering stage	30.303
	SRR8316908	Gold flowering stage	28.619
SRP132670	SRR6706286	Control	53.173
	SRR6706287	Light intensity 50%	50.616
	SRR6706288	Light intensity 20%	54.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.720
	CNS0095593	Slightly white alabastrum(diploid) 2	21.191
	CNS0095594	Slightly white alabastrum(diploid) 3	20.907
	CNS0095595	Whole white alabastrum(diploid) 2	19.016
	CNS0095596	Whole white alabastrum(diploid) 3	19.378
	CNS0095597	Whole white alabastrum(diploid) 4	16.980
	CNS0095598	Silvery flower (diploied) 1	24.384
	CNS0095599	Silvery flower (diploied) 2	23.506
	CNS0095600	Silvery flower (diploied) 3	31.003
	CNS0095601	Golden flower (diploid) 1	26.129
	CNS0095602	Golden flower (diploid) 2	29.106
	CNS0095603	Golden flower (diploid) 3	25.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.088
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.020
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.409
	CNS0095610	Silvery flower (tetraploid) 1	19.931
	CNS0095611	Silvery flower (tetraploid) 2	22.262
	CNS0095612	Silvery flower (tetraploid) 3	22.089
	CNS0095613	Golden flower (tetraploid) 1	7.591
	CNS0095614	Golden flower (tetraploid) 2	13.551
	CNS0095615	Golden flower (tetraploid) 3	11.019
CRA001975	CRR073297	Stem 1	22.012
	CRR073298	Stem 2	21.737
	CRR073299	Stem 3	22.657
	CRR073300	Leaf 1	25.741
	CRR073301	Leaf 2	28.919
	CRR073302	Leaf 3	29.155
	CRR073303	Juvenile bud 1	28.471
	CRR073304	Juvenile bud 2	28.022
	CRR073305	Juvenile bud 3	33.449
	CRR073306	Third green 1	15.430
	CRR073307	Third green 2	16.850
	CRR073308	Third green 3	15.761
	CRR073309	Second white 1	9.559
	CRR073310	Second white 2	8.085
	CRR073311	Second white 3	6.570
	CRR073312	Silver flowering 1	4.430
	CRR073313	Silver flowering 2	3.722
	CRR073314	Silver flowering 3	3.945
	CRR073315	Gold flowering 1	9.801
	CRR073316	Gold flowering 2	12.934
	CRR073317	Gold flowering 3	10.472
	CRR073318	Tawny withering 1	18.430
	CRR073319	Tawny withering 2	19.144
	CRR073320	Tawny withering 3	17.968