Detail information of GWHGAAZE001708


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009617790.11.2333E-133PREDICTED: ubiquinol-cytochrome-c reductase complex assembly factor 1-like [Nicotiana tomentosiformis]
trEMBLtr|A0A061G097|A0A061G097_THECC8E-130Ubiquinol-cytochrome C chaperone family protein isoform 1 {ECO:0000313|EMBL:EOY22793.1}
TAIR10AT5G51220.11E-92ubiquinol-cytochrome C chaperone family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5844643558450140-
GWHAAZE00000001mRNA5844643558450140-
GWHAAZE00000001exon5844643558446513-
GWHAAZE00000001exon5844698458447108-
GWHAAZE00000001exon5844778758447953-
GWHAAZE00000001exon5844869558448908-
GWHAAZE00000001exon5844981658450004-
GWHAAZE00000001exon5845013558450140-
GWHAAZE00000001CDS5845013558450140-
GWHAAZE00000001CDS5844981658450004-
GWHAAZE00000001CDS5844869558448908-
GWHAAZE00000001CDS5844778758447953-
GWHAAZE00000001CDS5844698458447108-
GWHAAZE00000001CDS5844643558446513-
Transcript Sequence

Network for GWHGAAZE001708

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0010map04146 Peroxisome
map04146 Peroxisome
Transcription factor MYB family Transcription factor MYB


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03981.13Ubiq_cyt_C_chap1382431.50E-27
PF00249.32Myb_DNA-binding14625.60E-14
PF00249.32Myb_DNA-binding691116.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.454
SRR3591706second leaf9.656
SRR3591707mature leaf12.798
SRR3591708Shoot apex16.038
SRR3591709Stem16.635
SRR3591710White floral bud18.284
SRR3591711White flower22.076
SRR3591712Green floral bud23.660
SRR3591713Yellow flower18.586
SRP173429 SRR8316895Juvenile bud stage 16.365
SRR8316896Juvenile bud stage 26.589
SRR8316897Juvenile bud stage 17.329
SRR8316894Third green stage 11.189
SRR8316900Third green stage 36.852
SRR8316901Third green stage 33.886
SRR8316898Complete white stage 15.663
SRR8316899Complete white stage 35.142
SRR8316903Complete white stage 22.550
SRR8316902Silver flowering stage14.611
SRR8316904Silver flowering stage23.431
SRR8316905Silver flowering stage11.813
SRR8316906Gold flowering stage 38.077
SRR8316907Gold flowering stage 39.221
SRR8316908Gold flowering stage 38.530
SRP132670SRR6706286Control31.894
SRR6706287Light intensity 50%30.556
SRR6706288Light intensity 20%32.811
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.600
CNS0095593Slightly white alabastrum(diploid) 222.187
CNS0095594Slightly white alabastrum(diploid) 324.836
CNS0095595Whole white alabastrum(diploid) 222.487
CNS0095596Whole white alabastrum(diploid) 323.872
CNS0095597Whole white alabastrum(diploid) 417.988
CNS0095598Silvery flower (diploied) 121.202
CNS0095599Silvery flower (diploied) 218.447
CNS0095600Silvery flower (diploied) 327.750
CNS0095601Golden flower (diploid) 116.644
CNS0095602Golden flower (diploid) 224.091
CNS0095603Golden flower (diploid) 324.315
CNS0095604Slightly white alabastrum(tetraploid) 126.014
CNS0095605Slightly white alabastrum(tetraploid) 221.018
CNS0095606Slightly white alabastrum(tetraploid) 329.811
CNS0095607Whole white alabastrum(tetraploid) 114.482
CNS0095608Whole white alabastrum(tetraploid) 216.049
CNS0095609Whole white alabastrum(tetraploid) 331.100
CNS0095610Silvery flower (tetraploid) 132.529
CNS0095611Silvery flower (tetraploid) 233.362
CNS0095612Silvery flower (tetraploid) 328.905
CNS0095613Golden flower (tetraploid) 122.083
CNS0095614Golden flower (tetraploid) 232.697
CNS0095615Golden flower (tetraploid) 322.956
CRA001975CRR073297Stem 117.250
CRR073298Stem 216.153
CRR073299Stem 313.660
CRR073300Leaf 119.209
CRR073301Leaf 215.566
CRR073302Leaf 317.708
CRR073303Juvenile bud 114.710
CRR073304Juvenile bud 215.519
CRR073305Juvenile bud 39.968
CRR073306Third green 19.302
CRR073307Third green 28.401
CRR073308Third green 38.065
CRR073309Second white 111.476
CRR073310Second white 212.065
CRR073311Second white 39.348
CRR073312Silver flowering 16.835
CRR073313Silver flowering 23.955
CRR073314Silver flowering 35.607
CRR073315Gold flowering 111.047
CRR073316Gold flowering 211.750
CRR073317Gold flowering 35.975
CRR073318Tawny withering 19.218
CRR073319Tawny withering 211.097
CRR073320Tawny withering 311.198