Gene detail

Detail information of GWHGAAZE001702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAP28173.1	3.2387E-115	flowering locus T-like protein [Fagus crenata]
Swissprot	tr\|Q93WI9\|HD3A_ORYSJ	1E-106	Protein HEADING DATE 3A
trEMBL	tr\|A0A077K8V1\|A0A077K8V1_FAGCR	1E-115	Flowering locus T-like protein {ECO:0000313\|EMBL:BAP28173.1}
TAIR10	AT1G65480.1	2E-68	PEBP (phosphatidylethanolamine-binding protein) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58252707	58257150	-
GWHAAZE00000001	mRNA	58252707	58257150	-
GWHAAZE00000001	exon	58252707	58253106	-
GWHAAZE00000001	exon	58254371	58254411	-
GWHAAZE00000001	exon	58256686	58256747	-
GWHAAZE00000001	exon	58256956	58257150	-
GWHAAZE00000001	CDS	58256956	58257150	-
GWHAAZE00000001	CDS	58256686	58256747	-
GWHAAZE00000001	CDS	58254371	58254411	-
GWHAAZE00000001	CDS	58252883	58253106	-
GWHAAZE00000001	three_prime_UTR	58252707	58252882	-

Transcript Sequence
>GWHTAAZE001706 CCTAGAGACAGAGATCCACTAGTAGTTGGAAGGGTAGTAGGGGATGTGCTGGATCCCTTTACAAGGTCTATAGGCCTCACTGTTAATTTCAACAATAGGGAAGTGAATAATGGTTGTGAGCTTAGACCCTCTCAAGTTGTCAACCAACCTAGGGTTGATATTGGTGGCAATGACCTTAGAACTTTTTACACTCTTGTTATGGTGGACCCTGATGCTCCTAGTCCAAGTGACCCAAACTTGAGGGAGTACTTGCATTGGTTGGTCACTGATATCCCAGCAACCACGGGTGCAAATTTCGGTCAAGAGGTGGTGTGCTACGAGAGTCCGAGGCCGTCAATGGGAATTCATCGGTTCGTATTCGTATTGTTCCGACAATTGGGTCGACAGACAGTTTACCCTCCTGGGTGGCGCCAAAATTTCAATACCAGAGATTTCGCCGAGCTTTACAATCTCGGCTCCCCTGTTGCCGCCGTCTATTTCAACTGTCAGAGGGAGAGTGGCTCTGGAGGCCGAAGACGATGATACAAAAAAGAAAGAAAGAAAGAAGAAAAGGCATTTCCATCTCCCTTTATGTCTTTATCTCTATGCATATTTTGAATATGTTTTGTAGAGATTGGAACAAGTGAGTAGTAGATGTTTTGATGTATTAGTATACATTTGCGGGTTGTTTTAATGACGCATGAATTAAGTAACCTACG

Network for GWHGAAZE001702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01161.21	PBP	60	159	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16223	FT	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.053
	SRR3591707	mature leaf	4.323
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.137
	SRR3591710	White floral bud	20.606
	SRR3591711	White flower	0.477
	SRR3591712	Green floral bud	48.334
	SRR3591713	Yellow flower	0.222
SRP173429	SRR8316895	Juvenile bud stage	4.577
	SRR8316896	Juvenile bud stage	3.555
	SRR8316897	Juvenile bud stage	0.887
	SRR8316894	Third green stage	2.309
	SRR8316900	Third green stage	13.486
	SRR8316901	Third green stage	16.702
	SRR8316898	Complete white stage	5.067
	SRR8316899	Complete white stage	57.956
	SRR8316903	Complete white stage	14.083
	SRR8316902	Silver flowering stage	0.425
	SRR8316904	Silver flowering stage	0.332
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.218
SRP132670	SRR6706286	Control	14.115
	SRR6706287	Light intensity 50%	11.960
	SRR6706288	Light intensity 20%	11.633
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.151
	CNS0095593	Slightly white alabastrum(diploid) 2	20.671
	CNS0095594	Slightly white alabastrum(diploid) 3	7.225
	CNS0095595	Whole white alabastrum(diploid) 2	15.475
	CNS0095596	Whole white alabastrum(diploid) 3	5.772
	CNS0095597	Whole white alabastrum(diploid) 4	12.706
	CNS0095598	Silvery flower (diploied) 1	2.246
	CNS0095599	Silvery flower (diploied) 2	0.530
	CNS0095600	Silvery flower (diploied) 3	0.642
	CNS0095601	Golden flower (diploid) 1	0.257
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.356
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.624
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.558
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.486
	CNS0095610	Silvery flower (tetraploid) 1	0.361
	CNS0095611	Silvery flower (tetraploid) 2	0.454
	CNS0095612	Silvery flower (tetraploid) 3	0.432
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.326
	CNS0095615	Golden flower (tetraploid) 3	0.151
CRA001975	CRR073297	Stem 1	0.931
	CRR073298	Stem 2	2.422
	CRR073299	Stem 3	2.104
	CRR073300	Leaf 1	16.191
	CRR073301	Leaf 2	17.696
	CRR073302	Leaf 3	9.433
	CRR073303	Juvenile bud 1	17.163
	CRR073304	Juvenile bud 2	9.226
	CRR073305	Juvenile bud 3	31.170
	CRR073306	Third green 1	1.183
	CRR073307	Third green 2	0.943
	CRR073308	Third green 3	0.193
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.671
	CRR073316	Gold flowering 2	3.599
	CRR073317	Gold flowering 3	2.260
	CRR073318	Tawny withering 1	3.518
	CRR073319	Tawny withering 2	8.169
	CRR073320	Tawny withering 3	4.336