Detail information of GWHGAAZE001657


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEPS70525.17.651E-107hypothetical protein M569_04233, partial [Genlisea aurea]
Swissprottr|Q8W1Y0|SSC14_ARATH4E-104Sister chromatid cohesion 1 protein 4
trEMBLtr|S8CUQ9|S8CUQ9_9LAMI3E-107Uncharacterized protein {ECO:0000313|EMBL:EPS70525.1} (Fragment)
TAIR10AT5G16270.12E-90sister chromatid cohesion 1 protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5682268856830583-
GWHAAZE00000001mRNA5682268856830583-
GWHAAZE00000001exon5682268856822689-
GWHAAZE00000001exon5682474056824987-
GWHAAZE00000001exon5682569556825956-
GWHAAZE00000001exon5683029256830583-
GWHAAZE00000001five_prime_UTR5683041656830583-
GWHAAZE00000001CDS5683029256830415-
GWHAAZE00000001CDS5682569556825956-
GWHAAZE00000001CDS5682474056824987-
GWHAAZE00000001CDS5682268856822689-
Transcript Sequence

Network for GWHGAAZE001657

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04825.14Rad21_Rec8_N11014.10E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06670SCC1, MCD1, RAD21 Cell cycle map04110
Cell cycle - yeastmap04111

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.665
SRR3591706second leaf4.003
SRR3591707mature leaf7.530
SRR3591708Shoot apex5.598
SRR3591709Stem8.464
SRR3591710White floral bud7.811
SRR3591711White flower8.128
SRR3591712Green floral bud6.279
SRR3591713Yellow flower9.307
SRP173429 SRR8316895Juvenile bud stage 2.851
SRR8316896Juvenile bud stage 3.950
SRR8316897Juvenile bud stage 1.949
SRR8316894Third green stage 2.338
SRR8316900Third green stage 3.070
SRR8316901Third green stage 3.390
SRR8316898Complete white stage 1.039
SRR8316899Complete white stage 7.046
SRR8316903Complete white stage 3.507
SRR8316902Silver flowering stage2.617
SRR8316904Silver flowering stage4.181
SRR8316905Silver flowering stage2.374
SRR8316906Gold flowering stage 4.216
SRR8316907Gold flowering stage 4.080
SRR8316908Gold flowering stage 4.254
SRP132670SRR6706286Control4.529
SRR6706287Light intensity 50%5.977
SRR6706288Light intensity 20%5.466
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.962
CNS0095593Slightly white alabastrum(diploid) 20.798
CNS0095594Slightly white alabastrum(diploid) 31.195
CNS0095595Whole white alabastrum(diploid) 21.271
CNS0095596Whole white alabastrum(diploid) 30.545
CNS0095597Whole white alabastrum(diploid) 42.060
CNS0095598Silvery flower (diploied) 13.840
CNS0095599Silvery flower (diploied) 21.912
CNS0095600Silvery flower (diploied) 35.304
CNS0095601Golden flower (diploid) 13.271
CNS0095602Golden flower (diploid) 29.525
CNS0095603Golden flower (diploid) 38.740
CNS0095604Slightly white alabastrum(tetraploid) 11.177
CNS0095605Slightly white alabastrum(tetraploid) 21.238
CNS0095606Slightly white alabastrum(tetraploid) 38.790
CNS0095607Whole white alabastrum(tetraploid) 11.130
CNS0095608Whole white alabastrum(tetraploid) 20.958
CNS0095609Whole white alabastrum(tetraploid) 33.648
CNS0095610Silvery flower (tetraploid) 16.939
CNS0095611Silvery flower (tetraploid) 26.767
CNS0095612Silvery flower (tetraploid) 35.430
CNS0095613Golden flower (tetraploid) 12.246
CNS0095614Golden flower (tetraploid) 25.356
CNS0095615Golden flower (tetraploid) 313.379
CRA001975CRR073297Stem 15.162
CRR073298Stem 24.882
CRR073299Stem 33.748
CRR073300Leaf 14.975
CRR073301Leaf 25.422
CRR073302Leaf 33.125
CRR073303Juvenile bud 13.223
CRR073304Juvenile bud 22.566
CRR073305Juvenile bud 34.540
CRR073306Third green 13.399
CRR073307Third green 21.903
CRR073308Third green 32.981
CRR073309Second white 11.081
CRR073310Second white 22.509
CRR073311Second white 34.663
CRR073312Silver flowering 13.186
CRR073313Silver flowering 22.348
CRR073314Silver flowering 32.769
CRR073315Gold flowering 11.473
CRR073316Gold flowering 26.012
CRR073317Gold flowering 31.574
CRR073318Tawny withering 12.775
CRR073319Tawny withering 23.346
CRR073320Tawny withering 32.351