Detail information of GWHGAAZE001641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008218955.12.66481E-22PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Prunus mume]
trEMBLtr|A0A068V6P4|A0A068V6P4_COFCA2E-20Coffea canephora DH200=94 genomic scaffold, scaffold_127 {ECO:0000313|EMBL:CDP16470.1}
TAIR10AT3G57000.17E-13nucleolar essential protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5545508255455621-
GWHAAZE00000001mRNA5545508255455621-
GWHAAZE00000001exon5545508255455195-
GWHAAZE00000001exon5545541555455621-
GWHAAZE00000001CDS5545541555455621-
GWHAAZE00000001CDS5545508255455195-
Transcript Sequence

Network for GWHGAAZE001641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14568EMG1, NEP1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.517
SRR3591706second leaf2.923
SRR3591707mature leaf4.763
SRR3591708Shoot apex5.317
SRR3591709Stem6.864
SRR3591710White floral bud8.429
SRR3591711White flower9.169
SRR3591712Green floral bud8.003
SRR3591713Yellow flower9.561
SRP173429 SRR8316895Juvenile bud stage 4.688
SRR8316896Juvenile bud stage 4.660
SRR8316897Juvenile bud stage 3.014
SRR8316894Third green stage 0.949
SRR8316900Third green stage 6.408
SRR8316901Third green stage 3.954
SRR8316898Complete white stage 1.742
SRR8316899Complete white stage 8.321
SRR8316903Complete white stage 3.779
SRR8316902Silver flowering stage3.098
SRR8316904Silver flowering stage4.019
SRR8316905Silver flowering stage1.309
SRR8316906Gold flowering stage 4.503
SRR8316907Gold flowering stage 5.119
SRR8316908Gold flowering stage 7.822
SRP132670SRR6706286Control1.502
SRR6706287Light intensity 50%1.807
SRR6706288Light intensity 20%1.732
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.817
CNS0095593Slightly white alabastrum(diploid) 22.321
CNS0095594Slightly white alabastrum(diploid) 33.811
CNS0095595Whole white alabastrum(diploid) 23.458
CNS0095596Whole white alabastrum(diploid) 34.467
CNS0095597Whole white alabastrum(diploid) 43.639
CNS0095598Silvery flower (diploied) 13.777
CNS0095599Silvery flower (diploied) 26.548
CNS0095600Silvery flower (diploied) 37.589
CNS0095601Golden flower (diploid) 14.916
CNS0095602Golden flower (diploid) 27.666
CNS0095603Golden flower (diploid) 34.100
CNS0095604Slightly white alabastrum(tetraploid) 15.705
CNS0095605Slightly white alabastrum(tetraploid) 25.119
CNS0095606Slightly white alabastrum(tetraploid) 310.288
CNS0095607Whole white alabastrum(tetraploid) 12.073
CNS0095608Whole white alabastrum(tetraploid) 23.510
CNS0095609Whole white alabastrum(tetraploid) 36.880
CNS0095610Silvery flower (tetraploid) 18.162
CNS0095611Silvery flower (tetraploid) 210.484
CNS0095612Silvery flower (tetraploid) 38.239
CNS0095613Golden flower (tetraploid) 14.942
CNS0095614Golden flower (tetraploid) 27.096
CNS0095615Golden flower (tetraploid) 37.711
CRA001975CRR073297Stem 11.433
CRR073298Stem 21.845
CRR073299Stem 32.284
CRR073300Leaf 11.174
CRR073301Leaf 21.649
CRR073302Leaf 31.056
CRR073303Juvenile bud 11.005
CRR073304Juvenile bud 21.145
CRR073305Juvenile bud 30.869
CRR073306Third green 10.032
CRR073307Third green 20.179
CRR073308Third green 30.746
CRR073309Second white 10.130
CRR073310Second white 20.992
CRR073311Second white 30.356
CRR073312Silver flowering 10.498
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.183
CRR073315Gold flowering 12.625
CRR073316Gold flowering 20.598
CRR073317Gold flowering 31.156
CRR073318Tawny withering 11.180
CRR073319Tawny withering 22.383
CRR073320Tawny withering 31.786