Detail information of GWHGAAZE001563


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009777198.10PREDICTED: probable polyamine oxidase 2 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9LYT1|PAO3_ARATH0Polyamine oxidase 3
trEMBLtr|E0CTZ8|E0CTZ8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22064.3}
TAIR10AT2G43020.10polyamine oxidase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5219315052198040-
GWHAAZE00000001mRNA5219315052198040-
GWHAAZE00000001exon5219315052193437-
GWHAAZE00000001exon5219412152194550-
GWHAAZE00000001exon5219507752195174-
GWHAAZE00000001exon5219636252196464-
GWHAAZE00000001exon5219656252196647-
GWHAAZE00000001exon5219675552196842-
GWHAAZE00000001exon5219727252197385-
GWHAAZE00000001exon5219750152197589-
GWHAAZE00000001exon5219792452198040-
GWHAAZE00000001CDS5219792452198040-
GWHAAZE00000001CDS5219750152197589-
GWHAAZE00000001CDS5219727252197385-
GWHAAZE00000001CDS5219675552196842-
GWHAAZE00000001CDS5219656252196647-
GWHAAZE00000001CDS5219636252196464-
GWHAAZE00000001CDS5219507752195174-
GWHAAZE00000001CDS5219412152194550-
GWHAAZE00000001CDS5219315052193437-
Transcript Sequence

Network for GWHGAAZE001563

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01593.25Amino_oxidase244444.20E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17839PAO4, PAO3, PAO2 Metabolic pathways map01100
Arginine and proline metabolismmap00330
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.368
SRR3591706second leaf44.387
SRR3591707mature leaf42.247
SRR3591708Shoot apex24.485
SRR3591709Stem11.924
SRR3591710White floral bud30.577
SRR3591711White flower9.796
SRR3591712Green floral bud21.842
SRR3591713Yellow flower8.557
SRP173429 SRR8316895Juvenile bud stage 18.250
SRR8316896Juvenile bud stage 21.904
SRR8316897Juvenile bud stage 7.832
SRR8316894Third green stage 4.179
SRR8316900Third green stage 15.348
SRR8316901Third green stage 19.289
SRR8316898Complete white stage 12.436
SRR8316899Complete white stage 38.637
SRR8316903Complete white stage 27.891
SRR8316902Silver flowering stage2.486
SRR8316904Silver flowering stage5.856
SRR8316905Silver flowering stage1.897
SRR8316906Gold flowering stage 4.405
SRR8316907Gold flowering stage 3.632
SRR8316908Gold flowering stage 3.321
SRP132670SRR6706286Control17.913
SRR6706287Light intensity 50%17.628
SRR6706288Light intensity 20%16.271
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.247
CNS0095593Slightly white alabastrum(diploid) 28.020
CNS0095594Slightly white alabastrum(diploid) 311.237
CNS0095595Whole white alabastrum(diploid) 27.131
CNS0095596Whole white alabastrum(diploid) 36.100
CNS0095597Whole white alabastrum(diploid) 416.270
CNS0095598Silvery flower (diploied) 138.252
CNS0095599Silvery flower (diploied) 247.606
CNS0095600Silvery flower (diploied) 315.963
CNS0095601Golden flower (diploid) 132.135
CNS0095602Golden flower (diploid) 220.184
CNS0095603Golden flower (diploid) 318.479
CNS0095604Slightly white alabastrum(tetraploid) 112.379
CNS0095605Slightly white alabastrum(tetraploid) 29.963
CNS0095606Slightly white alabastrum(tetraploid) 328.383
CNS0095607Whole white alabastrum(tetraploid) 119.963
CNS0095608Whole white alabastrum(tetraploid) 27.185
CNS0095609Whole white alabastrum(tetraploid) 316.993
CNS0095610Silvery flower (tetraploid) 14.772
CNS0095611Silvery flower (tetraploid) 210.118
CNS0095612Silvery flower (tetraploid) 38.277
CNS0095613Golden flower (tetraploid) 11.524
CNS0095614Golden flower (tetraploid) 24.455
CNS0095615Golden flower (tetraploid) 32.184
CRA001975CRR073297Stem 127.744
CRR073298Stem 231.856
CRR073299Stem 330.121
CRR073300Leaf 127.057
CRR073301Leaf 219.849
CRR073302Leaf 318.121
CRR073303Juvenile bud 125.064
CRR073304Juvenile bud 227.562
CRR073305Juvenile bud 338.687
CRR073306Third green 19.125
CRR073307Third green 211.170
CRR073308Third green 311.920
CRR073309Second white 16.670
CRR073310Second white 23.645
CRR073311Second white 33.361
CRR073312Silver flowering 17.300
CRR073313Silver flowering 210.937
CRR073314Silver flowering 38.036
CRR073315Gold flowering 12.596
CRR073316Gold flowering 29.169
CRR073317Gold flowering 35.828
CRR073318Tawny withering 16.120
CRR073319Tawny withering 211.142
CRR073320Tawny withering 32.885