Gene detail

Detail information of GWHGAAZE001557

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009381749.1	5.087E-102	PREDICTED: LOW QUALITY PROTEIN: ent-kaur-16-ene synthase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|C1K5M3\|PHS1_SOLLC	4E-86	Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic (Precursor)
trEMBL	tr\|B9SIM2\|B9SIM2_RICCO	2E-97	Ent-kaurene synthase B, chloroplast, putative {ECO:0000313\|EMBL:EEF36535.1}
TAIR10	AT1G79460.1	4E-65	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	51959569	51974286	+
GWHAAZE00000001	mRNA	51959569	51974286	+
GWHAAZE00000001	exon	51959569	51959650	+
GWHAAZE00000001	exon	51959762	51959820	+
GWHAAZE00000001	exon	51960168	51960474	+
GWHAAZE00000001	exon	51960645	51960825	+
GWHAAZE00000001	exon	51960998	51961197	+
GWHAAZE00000001	exon	51961632	51961752	+
GWHAAZE00000001	exon	51963186	51963284	+
GWHAAZE00000001	exon	51972001	51972219	+
GWHAAZE00000001	exon	51972759	51972909	+
GWHAAZE00000001	exon	51973981	51974286	+
GWHAAZE00000001	CDS	51959569	51959650	+
GWHAAZE00000001	CDS	51959762	51959820	+
GWHAAZE00000001	CDS	51960168	51960474	+
GWHAAZE00000001	CDS	51960645	51960825	+
GWHAAZE00000001	CDS	51960998	51961197	+
GWHAAZE00000001	CDS	51961632	51961752	+
GWHAAZE00000001	CDS	51963186	51963284	+
GWHAAZE00000001	CDS	51972001	51972219	+
GWHAAZE00000001	CDS	51972759	51972909	+
GWHAAZE00000001	CDS	51973981	51974286	+

Transcript Sequence
>GWHTAAZE001561 ATGGCTCATATGTTACTTTCTCATCAGGGTAATCTTGTAAATCTCCCACAACATAAAATCAGGACTAGAAAATATCTATCAGCAAACCTGTGTTTGAATAAGAGACGAATAATCGCAGCGAGCCAGCTCGACGTTGATCTGGACAAGAACGCTGAAGCGTCGATTGAAAGAATAAGAGAGAGATTTGGTAAGGTGGATTTATCAATATCTTCATATGACACTGCATGGGTGGCCATGGTCCCTTCCAACAGGAGCTCTCAAAATCATCATCATCATCAGCCTAGTTTTCCTGATTGTCTGGAATGGGTAATGGAGAATCAGAAAGCAGATGGATCTTGGGGATTAGATGTCAGCCATCCGTCACTTGTTAGAGACTGCCTCTCTTCCACACTTGCTTGTGTACTTGCACTCCAAAAATGGAAGGTGGGGGAAAATCTTGTTCAAAAAGGACTTGACTTTATTGGGTCAAAGAAGTATGCTGTTATGGACAAGTATCAGAAATCTCCAATGGGGTTCGATATTATATTTCCGGGCATGATTAATTATGCCAACAACTTGGGTTTGAATCTGCCCCTTGATTCAGCTTTCATTGATTTAATGCTCCGTAATCGAGACCTTAAACTTCAAAGTTGCAAGGGAAGCCGTCTAGCCTATTTTGCTGAAGGAGTAATGGGAGAATATGATTGGAAAGAGATGATTAAGAACGAACAAAGAAGTAATGGTTCTCTTTTTAATTCACCTGCGACTACAGCTGCTGCTTTGATTTCCCTTCACGACGATAAATGTTTTGACTACTTGGACTCCCTTTTGAAAATTCAGGGAAAAGCTGTTCCTACAATTTATCCCTTCGACATATTTACCCGTCTATGCATGGTGGATACTATCGACAGATTGGGAATAAATATATATTTTGGACATGAGATCAAAGTTGTTCTTGATGAAGCATACAGGTGTTCCAGTATTGATAACAAAGACTTCCTTATACTTTCCCAACAAGATTTTAACAAGATTCAAGACATACACCTTGAGGAATTTAAGCAAGTAGAAAAGTGGCTAAAAGATCACAGAGTGGGTGGTTTGATTTCCAATTGGCAATTAGTGCCTTGCTCCTATTTGCATGTTGCTGCCCTTTACATTCGTCCCGAATTTAGCGATGCTCGCAAATTCTGGACCAAAAGTTCTGTGGTTGCAACCCTTATTGATGATCTATTCGATACTAGTTATGGCATCCCGGAAGAATTGCTCAACTTCGTTGAATTGGTTGAAAACTGGGATGGAGATTCAAATATTTCAGGTCTTGGTTATAGTTCCGAACGGATCCAAATCCTATTTCTTGCCGTCACAGATGTAATCAACGAGCAAGCTGCCAAGGGTTTGATAACGCAGGGACGATGCATAAAGCACGAGCTTATTCAAACACGTGATACAGTTGAGAGAAATATTAATGCTTGCTCAGTGATAGTAAATCACAGTGATGGGGCTATAAGTATTGAAGAAGCGAAAATAGAAGTGAGGAGAATGATTGAAAGCAGTAGGAGAGAATTGCTGCGAATGATGGTTACAGAACAAAGTCGTACTCGAAAAAAGTTGATTGAGTTGTTTTTTTGCGCAAACCAGGCAACGTATTACACCTATATAGGAAACGACGAGTTTAGGACCACAACAAGAAAAGGATTAGATGATCTGAATGGACTTCTTTACCATCCTCTCGATCTTCTCCCCTGA

Network for GWHGAAZE001557

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	228	323	8.20E-15
PF03936.17	Terpene_synth_C	328	470	2.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.026
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.162
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.497
	SRR3591711	White flower	0.088
	SRR3591712	Green floral bud	1.692
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.013
	SRR8316896	Juvenile bud stage	0.012
	SRR8316897	Juvenile bud stage	0.031
	SRR8316894	Third green stage	0.069
	SRR8316900	Third green stage	1.921
	SRR8316901	Third green stage	1.982
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.005
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.011
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.022
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.117
	SRR6706287	Light intensity 50%	0.916
	SRR6706288	Light intensity 20%	0.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.694
	CNS0095593	Slightly white alabastrum(diploid) 2	2.180
	CNS0095594	Slightly white alabastrum(diploid) 3	2.043
	CNS0095595	Whole white alabastrum(diploid) 2	9.601
	CNS0095596	Whole white alabastrum(diploid) 3	11.754
	CNS0095597	Whole white alabastrum(diploid) 4	17.481
	CNS0095598	Silvery flower (diploied) 1	0.033
	CNS0095599	Silvery flower (diploied) 2	0.177
	CNS0095600	Silvery flower (diploied) 3	0.142
	CNS0095601	Golden flower (diploid) 1	0.006
	CNS0095602	Golden flower (diploid) 2	0.086
	CNS0095603	Golden flower (diploid) 3	0.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.635
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.027
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.086
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.488
	CNS0095610	Silvery flower (tetraploid) 1	0.012
	CNS0095611	Silvery flower (tetraploid) 2	0.178
	CNS0095612	Silvery flower (tetraploid) 3	0.728
	CNS0095613	Golden flower (tetraploid) 1	0.062
	CNS0095614	Golden flower (tetraploid) 2	0.034
	CNS0095615	Golden flower (tetraploid) 3	0.559
CRA001975	CRR073297	Stem 1	0.090
	CRR073298	Stem 2	0.136
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.081
	CRR073301	Leaf 2	0.603
	CRR073302	Leaf 3	0.102
	CRR073303	Juvenile bud 1	0.527
	CRR073304	Juvenile bud 2	0.471
	CRR073305	Juvenile bud 3	0.089
	CRR073306	Third green 1	0.245
	CRR073307	Third green 2	0.143
	CRR073308	Third green 3	0.378
	CRR073309	Second white 1	0.014
	CRR073310	Second white 2	0.013
	CRR073311	Second white 3	0.097
	CRR073312	Silver flowering 1	0.187
	CRR073313	Silver flowering 2	0.323
	CRR073314	Silver flowering 3	0.055
	CRR073315	Gold flowering 1	0.209
	CRR073316	Gold flowering 2	0.105
	CRR073317	Gold flowering 3	0.024
	CRR073318	Tawny withering 1	0.640
	CRR073319	Tawny withering 2	0.204
	CRR073320	Tawny withering 3	0.524