Detail information of GWHGAAZE001315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090148.13.99909E-92PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Sesamum indicum]
Swissprottr|Q9LJZ5|UBC19_ARATH2E-86Ubiquitin-conjugating enzyme E2 19
trEMBLtr|B9RIG7|B9RIG7_RICCO4E-92Ubiquitin-conjugating enzyme E2 C, putative {ECO:0000313|EMBL:EEF48939.1}
TAIR10AT3G20060.12E-68ubiquitin-conjugating enzyme19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3174529131746419+
GWHAAZE00000001mRNA3174529131746419+
GWHAAZE00000001exon3174529131745302+
GWHAAZE00000001exon3174543031745657+
GWHAAZE00000001exon3174590931745972+
GWHAAZE00000001exon3174609331746152+
GWHAAZE00000001exon3174637631746419+
GWHAAZE00000001CDS3174529131745302+
GWHAAZE00000001CDS3174543031745657+
GWHAAZE00000001CDS3174590931745972+
GWHAAZE00000001CDS3174609331746152+
GWHAAZE00000001CDS3174637631746419+
Transcript Sequence

Network for GWHGAAZE001315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con61299.10E-46
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06688UBE2C, UBC11 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf169.445
SRR3591706second leaf41.327
SRR3591707mature leaf6.608
SRR3591708Shoot apex369.034
SRR3591709Stem86.004
SRR3591710White floral bud18.782
SRR3591711White flower7.890
SRR3591712Green floral bud27.686
SRR3591713Yellow flower3.371
SRP173429 SRR8316895Juvenile bud stage 39.349
SRR8316896Juvenile bud stage 38.267
SRR8316897Juvenile bud stage 34.961
SRR8316894Third green stage 16.730
SRR8316900Third green stage 15.622
SRR8316901Third green stage 14.659
SRR8316898Complete white stage 1.856
SRR8316899Complete white stage 10.104
SRR8316903Complete white stage 1.995
SRR8316902Silver flowering stage1.657
SRR8316904Silver flowering stage2.416
SRR8316905Silver flowering stage0.591
SRR8316906Gold flowering stage 3.028
SRR8316907Gold flowering stage 3.218
SRR8316908Gold flowering stage 5.485
SRP132670SRR6706286Control5.975
SRR6706287Light intensity 50%5.977
SRR6706288Light intensity 20%6.528
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.978
CNS0095593Slightly white alabastrum(diploid) 241.685
CNS0095594Slightly white alabastrum(diploid) 341.414
CNS0095595Whole white alabastrum(diploid) 219.090
CNS0095596Whole white alabastrum(diploid) 310.775
CNS0095597Whole white alabastrum(diploid) 432.452
CNS0095598Silvery flower (diploied) 120.959
CNS0095599Silvery flower (diploied) 220.474
CNS0095600Silvery flower (diploied) 38.717
CNS0095601Golden flower (diploid) 18.476
CNS0095602Golden flower (diploid) 211.529
CNS0095603Golden flower (diploid) 38.785
CNS0095604Slightly white alabastrum(tetraploid) 132.771
CNS0095605Slightly white alabastrum(tetraploid) 228.009
CNS0095606Slightly white alabastrum(tetraploid) 336.856
CNS0095607Whole white alabastrum(tetraploid) 134.476
CNS0095608Whole white alabastrum(tetraploid) 222.828
CNS0095609Whole white alabastrum(tetraploid) 316.812
CNS0095610Silvery flower (tetraploid) 18.871
CNS0095611Silvery flower (tetraploid) 29.517
CNS0095612Silvery flower (tetraploid) 37.889
CNS0095613Golden flower (tetraploid) 15.220
CNS0095614Golden flower (tetraploid) 25.925
CNS0095615Golden flower (tetraploid) 31.028
CRA001975CRR073297Stem 114.290
CRR073298Stem 219.195
CRR073299Stem 322.513
CRR073300Leaf 18.666
CRR073301Leaf 26.008
CRR073302Leaf 33.199
CRR073303Juvenile bud 15.006
CRR073304Juvenile bud 23.257
CRR073305Juvenile bud 32.948
CRR073306Third green 10.780
CRR073307Third green 21.622
CRR073308Third green 30.665
CRR073309Second white 11.814
CRR073310Second white 23.011
CRR073311Second white 31.500
CRR073312Silver flowering 10.836
CRR073313Silver flowering 21.159
CRR073314Silver flowering 32.454
CRR073315Gold flowering 15.670
CRR073316Gold flowering 25.400
CRR073317Gold flowering 33.885
CRR073318Tawny withering 144.727
CRR073319Tawny withering 250.163
CRR073320Tawny withering 360.297