Detail information of GWHGAAZE001114


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277937.11.42044E-45PREDICTED: putative axial regulator YABBY 2 isoform X2 [Vitis vinifera]
Swissprottr|Q9XFB0|YAB2_ARATH2E-41Putative axial regulator YABBY 2
trEMBLtr|D7T1M7|D7T1M7_VITVI5E-46Putative uncharacterized protein {ECO:0000313|EMBL:CBI24407.3}
TAIR10AT1G08465.16E-32Plant-specific transcription factor YABBY family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2542651525430137-
GWHAAZE00000001mRNA2542651525430137-
GWHAAZE00000001exon2543002325430137-
GWHAAZE00000001exon2542795725428005-
GWHAAZE00000001exon2542738825427463-
GWHAAZE00000001exon2542651525426592-
GWHAAZE00000001CDS2543002325430137-
GWHAAZE00000001CDS2542795725428005-
GWHAAZE00000001CDS2542738825427463-
GWHAAZE00000001CDS2542651525426592-
Transcript Sequence

Network for GWHGAAZE001114

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04690.14YABBY28911.10E-38
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-YABBY

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0007275biological_processmulticellular organism development

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.714
SRR3591706second leaf17.221
SRR3591707mature leaf15.235
SRR3591708Shoot apex22.317
SRR3591709Stem2.391
SRR3591710White floral bud91.817
SRR3591711White flower71.180
SRR3591712Green floral bud62.927
SRR3591713Yellow flower78.183
SRP173429 SRR8316895Juvenile bud stage 13.056
SRR8316896Juvenile bud stage 19.702
SRR8316897Juvenile bud stage 19.533
SRR8316894Third green stage 8.829
SRR8316900Third green stage 31.880
SRR8316901Third green stage 36.660
SRR8316898Complete white stage 41.442
SRR8316899Complete white stage 90.411
SRR8316903Complete white stage 62.632
SRR8316902Silver flowering stage30.696
SRR8316904Silver flowering stage33.727
SRR8316905Silver flowering stage17.125
SRR8316906Gold flowering stage 45.314
SRR8316907Gold flowering stage 40.797
SRR8316908Gold flowering stage 58.121
SRP132670SRR6706286Control54.411
SRR6706287Light intensity 50%52.242
SRR6706288Light intensity 20%51.777
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.448
CNS0095593Slightly white alabastrum(diploid) 221.096
CNS0095594Slightly white alabastrum(diploid) 314.829
CNS0095595Whole white alabastrum(diploid) 220.919
CNS0095596Whole white alabastrum(diploid) 313.300
CNS0095597Whole white alabastrum(diploid) 421.544
CNS0095598Silvery flower (diploied) 121.072
CNS0095599Silvery flower (diploied) 227.869
CNS0095600Silvery flower (diploied) 352.234
CNS0095601Golden flower (diploid) 115.607
CNS0095602Golden flower (diploid) 244.323
CNS0095603Golden flower (diploid) 338.668
CNS0095604Slightly white alabastrum(tetraploid) 131.797
CNS0095605Slightly white alabastrum(tetraploid) 225.432
CNS0095606Slightly white alabastrum(tetraploid) 348.180
CNS0095607Whole white alabastrum(tetraploid) 125.649
CNS0095608Whole white alabastrum(tetraploid) 221.803
CNS0095609Whole white alabastrum(tetraploid) 330.389
CNS0095610Silvery flower (tetraploid) 162.037
CNS0095611Silvery flower (tetraploid) 259.368
CNS0095612Silvery flower (tetraploid) 362.729
CNS0095613Golden flower (tetraploid) 147.537
CNS0095614Golden flower (tetraploid) 241.739
CNS0095615Golden flower (tetraploid) 344.063
CRA001975CRR073297Stem 139.640
CRR073298Stem 235.965
CRR073299Stem 340.292
CRR073300Leaf 160.917
CRR073301Leaf 265.302
CRR073302Leaf 357.677
CRR073303Juvenile bud 171.388
CRR073304Juvenile bud 282.547
CRR073305Juvenile bud 371.008
CRR073306Third green 183.658
CRR073307Third green 275.006
CRR073308Third green 387.426
CRR073309Second white 153.177
CRR073310Second white 247.365
CRR073311Second white 327.790
CRR073312Silver flowering 122.760
CRR073313Silver flowering 228.335
CRR073314Silver flowering 319.733
CRR073315Gold flowering 110.164
CRR073316Gold flowering 212.350
CRR073317Gold flowering 312.862
CRR073318Tawny withering 10.903
CRR073319Tawny withering 23.708
CRR073320Tawny withering 30.071