Gene detail

Detail information of GWHGAAZE001109

Functional Annotation

Database	Orthologs	Annotation
Nr	AEF32083.1	ent-kaurene synthase [Castanea mollissima]
Swissprot	tr\|Q9SAK2\|KSB_ARATH	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|F6KWJ1\|F6KWJ1_9ROSI	Ent-kaurene synthase {ECO:0000313\|EMBL:AEF32083.1}
TAIR10	AT1G79460.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	25227748	25236018	+
GWHAAZE00000001	mRNA	25227748	25236018	+
GWHAAZE00000001	exon	25227748	25227926	+
GWHAAZE00000001	exon	25230676	25230725	+
GWHAAZE00000001	exon	25230981	25231266	+
GWHAAZE00000001	exon	25231360	25231443	+
GWHAAZE00000001	exon	25231962	25232168	+
GWHAAZE00000001	exon	25232278	25232398	+
GWHAAZE00000001	exon	25232480	25232604	+
GWHAAZE00000001	exon	25232707	25232933	+
GWHAAZE00000001	exon	25233022	25233137	+
GWHAAZE00000001	exon	25233245	25233343	+
GWHAAZE00000001	exon	25234315	25234530	+
GWHAAZE00000001	exon	25234938	25235079	+
GWHAAZE00000001	exon	25235176	25235421	+
GWHAAZE00000001	exon	25235707	25236018	+
GWHAAZE00000001	five_prime_UTR	25227748	25227841	+
GWHAAZE00000001	CDS	25227842	25227926	+
GWHAAZE00000001	CDS	25230676	25230725	+
GWHAAZE00000001	CDS	25230981	25231266	+
GWHAAZE00000001	CDS	25231360	25231443	+
GWHAAZE00000001	CDS	25231962	25232168	+
GWHAAZE00000001	CDS	25232278	25232398	+
GWHAAZE00000001	CDS	25232480	25232604	+
GWHAAZE00000001	CDS	25232707	25232933	+
GWHAAZE00000001	CDS	25233022	25233137	+
GWHAAZE00000001	CDS	25233245	25233343	+
GWHAAZE00000001	CDS	25234315	25234530	+
GWHAAZE00000001	CDS	25234938	25235079	+
GWHAAZE00000001	CDS	25235176	25235421	+
GWHAAZE00000001	CDS	25235707	25236018	+

Transcript Sequence
>GWHTAAZE001111 TTATAGCGCGCAAGTTGATCCAGTTTATTCCAACAGTTAAAAATACAAGTCTGATGCGCTTAAATTGGTATAGTATTTTCAAACTGCTGGAAATATGTATCTCTCCCAGTATTACTACTGCCCCAGCCCCCTCCTTCGCAACAAACCCCCCCACTGGGTTTCCTATGCATCTCTCTCCGCTTCGTCCGATGCTGGAGTTAAAATATCGAGAGGGGCTAATACTGTCCTGAGCTCTGAAGGGATCAAAGAAAGAATTAGGAAATTATTTAATAGGGTTGAACTCTCTGTCTCTTCGTATGACACCGCTTGGGTAGCTATGGTTCCTTCCCCACATTATTCTCTAGCCCCATGTTTTCCGGAGTGTGTAGATTGGTTATTGGATAATCAGCTTGGCGATGGCTCATGGGGTCTACCTAATCACAGTCACCTATTACTCAAAGACACTCTTTCCTCTACATTAGCGTGTATGCTTGCACTAAAGCGATGGGGTGTTGGTGAATACCAGATAAACAAGGGTCTGCATTTTATCGAGTTGAATTTCCCTTCAGTTATTGATAAGAGTCAACATTCTCCAATTGGATTTGACATCATATTTCCTGCCAGAGGAGAGGGAAGCCTACTTGGCATATGTATCAGAAGGATTAGGAAGTTCCAAGATTGGGAAATGGTGATGAAGAAATATCAGAGGAAGAACGGGTCACTCTTCAACTCGCCCGCCACTACAGCTGCTGCTCTTTCTCATCATCTTCAAGATGCTGGCTGTCATAATTATATTCGCACGCTCTTAGACAAGTTTGGGAATGCAGTTCCAACAGTTTACCCTCTAGATATATACCTACGCCTCTGCATGATTGACAATCTCGAAAAGCTCGGAATAGATTGGCATTTTCGGGAGGAAATTCGATGCGTGTTAGATGAAACATACAGTAACATAACATTGTACCCAAAAAATAGCTGCTGGCTACAGGGGGATGAACAGATATTTACGGATGTCCCGACTTGTGCGATAGCGTTTCGGCTACTACGGATGAATGGATATGATGTTGCTTCAGATCCTTTAACTCAAATTGCCAAGGAAGAGAGTTATTTCAGTTCATTTGGTGGTGAACATTTGAAGGGCATAAGTGATGCACTTGAATTGTATAGGGCGCAGTTGATTATATCTCCAGATGAATCTGCTTTGAGAAAGCAAAACTTACAGTCCAGTCATTTCCTCAAACAAACTTTAGCCGATGGTTCAGTTTGTTCAGATACTCTCTCTAGATATGTAGGGCAAGAGGTGGATGATGTTCTTAAGATTCCCTTCTGTGCAAGTTTAGAACGCATGGCCAACCGGAGAAATATAGAGAATTACAATGTAGACGGTACTTCAAGAATCCTAAAGACTTTGTATTGTTCATCTAATATTGGCAACAAAGATTTCCTAAAGCTGGCAGTAGAAGATTTTAACATCTGCCAGTCCATACACCGGGAAGAAATCGAACATATTGAGAGGTGGGTGATAGAGAACAGATTGGACAAGCTGAAGTTTGCGAGGCAGAGGGCAGCATATGCTTTTTTCTCTGCAGCAGCGACCATGTTCTCGCCTGAACTATCACATGCACGTATGTCATGGGCTAAAAATGCAGTGCTGACTACCGTGGTTGATGACTTTTTCGACGTTGGTGGTTCTATAGAGGAACTGCTCAATCTCATTCACTTGGTTGAAAAGTGGGATATAAATATAGAGTCTGATTGCTGTTCTGAGCATGTTCGGATAATTTTCTCAGCACTTTGCGGTGTAATTTGTGAGATTGAAGACCGAGCATTCATATATCAAGGACGCAGTGTGACTAGCCACATAGCTGAGATTTGGTTGGATTTGCTGAAGTCTATGTTGAGAGAAACTGAATGGTCTAGCGACAGATATGTGCCAAGCATGGATGAATATATGGAAAATGCATATGTATCGTTTGCCATAGGCCCAATTGTGCTCCCAACACTATATCTTGTTGGGCCGGAGCTCTCAGACGAGGCTGCTCGAAGTTCTGAAGCAAACAAGCTATTTAAGCTTATGAGCAATTGTGGGCGCCTTCTCAATGATATCCAAGGCTTCAAGAGGGAATCCGAGCAAGGTAAACTGAATGCCATATCGTTGCGAATGATTCATGGTGGTGGGAGTACTACGAAAGAAGAGGCTATAGAAGACGTGAGGAGGTTCGTGGAAACGCAGAGGGAAGAAGTGCTGAGGCTAGTACTGAAGGAGAAGGGGAGTGTGGTACCGAGAGCTTGCAAGGAGTTGTTTTGGAAAATGACAAAAGTGGTGCATCAATTCTACCTCAAGGACGACGGTTTCACTTCCCAAGGACTGATGAGCGCCTTCAAGGATATTATTCATGAACCCATTGCATTGCATGCCCTTGATGATTAG

Network for GWHGAAZE001109

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	188	393	1.70E-36
PF03936.17	Terpene_synth_C	444	708	1.00E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0000287	molecular_function	magnesium ion binding
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.221
	SRR3591706	second leaf	3.545
	SRR3591707	mature leaf	1.211
	SRR3591708	Shoot apex	5.249
	SRR3591709	Stem	9.756
	SRR3591710	White floral bud	3.397
	SRR3591711	White flower	3.185
	SRR3591712	Green floral bud	6.975
	SRR3591713	Yellow flower	0.919
SRP173429	SRR8316895	Juvenile bud stage	7.344
	SRR8316896	Juvenile bud stage	12.601
	SRR8316897	Juvenile bud stage	4.817
	SRR8316894	Third green stage	6.355
	SRR8316900	Third green stage	25.161
	SRR8316901	Third green stage	19.516
	SRR8316898	Complete white stage	2.901
	SRR8316899	Complete white stage	21.876
	SRR8316903	Complete white stage	4.515
	SRR8316902	Silver flowering stage	1.610
	SRR8316904	Silver flowering stage	2.687
	SRR8316905	Silver flowering stage	0.912
	SRR8316906	Gold flowering stage	3.670
	SRR8316907	Gold flowering stage	3.556
	SRR8316908	Gold flowering stage	2.258
SRP132670	SRR6706286	Control	20.428
	SRR6706287	Light intensity 50%	22.945
	SRR6706288	Light intensity 20%	22.856
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.113
	CNS0095593	Slightly white alabastrum(diploid) 2	18.031
	CNS0095594	Slightly white alabastrum(diploid) 3	12.016
	CNS0095595	Whole white alabastrum(diploid) 2	11.924
	CNS0095596	Whole white alabastrum(diploid) 3	13.252
	CNS0095597	Whole white alabastrum(diploid) 4	10.291
	CNS0095598	Silvery flower (diploied) 1	7.918
	CNS0095599	Silvery flower (diploied) 2	7.814
	CNS0095600	Silvery flower (diploied) 3	7.958
	CNS0095601	Golden flower (diploid) 1	6.773
	CNS0095602	Golden flower (diploid) 2	6.050
	CNS0095603	Golden flower (diploid) 3	6.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.429
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.803
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.013
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.429
	CNS0095610	Silvery flower (tetraploid) 1	3.911
	CNS0095611	Silvery flower (tetraploid) 2	4.795
	CNS0095612	Silvery flower (tetraploid) 3	5.652
	CNS0095613	Golden flower (tetraploid) 1	1.956
	CNS0095614	Golden flower (tetraploid) 2	2.546
	CNS0095615	Golden flower (tetraploid) 3	0.790
CRA001975	CRR073297	Stem 1	13.508
	CRR073298	Stem 2	12.665
	CRR073299	Stem 3	9.428
	CRR073300	Leaf 1	28.127
	CRR073301	Leaf 2	24.998
	CRR073302	Leaf 3	21.083
	CRR073303	Juvenile bud 1	20.509
	CRR073304	Juvenile bud 2	8.743
	CRR073305	Juvenile bud 3	19.281
	CRR073306	Third green 1	1.313
	CRR073307	Third green 2	1.361
	CRR073308	Third green 3	1.912
	CRR073309	Second white 1	1.823
	CRR073310	Second white 2	1.951
	CRR073311	Second white 3	1.573
	CRR073312	Silver flowering 1	0.832
	CRR073313	Silver flowering 2	0.991
	CRR073314	Silver flowering 3	0.524
	CRR073315	Gold flowering 1	2.971
	CRR073316	Gold flowering 2	3.103
	CRR073317	Gold flowering 3	2.848
	CRR073318	Tawny withering 1	14.216
	CRR073319	Tawny withering 2	13.494
	CRR073320	Tawny withering 3	16.684