Detail information of GWHGAAZE001069


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004291601.11.01409E-58PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Fragaria vesca subsp. vesca]
Swissprottr|P27788|FER3_MAIZE2E-60Ferredoxin-3, chloroplastic (Precursor)
trEMBLtr|B6STH7|B6STH7_MAIZE2E-58Ferredoxin-3 {ECO:0000313|EMBL:ACG28160.1}
TAIR10AT2G27510.12E-38ferredoxin 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2368539023685686-
GWHAAZE00000001mRNA2368539023685686-
GWHAAZE00000001exon2368539023685686-
GWHAAZE00000001CDS2368539023685686-
Transcript Sequence

Network for GWHGAAZE001069

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00111.28Fer211844.50E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02639petF Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0022900biological_processelectron transport chain
GO:0009055molecular_functionelectron transfer activity
GO:0051536molecular_functioniron-sulfur cluster binding
GO:0051537molecular_function2 iron, 2 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf108.855
SRR3591706second leaf294.636
SRR3591707mature leaf81.486
SRR3591708Shoot apex208.590
SRR3591709Stem91.425
SRR3591710White floral bud97.233
SRR3591711White flower121.461
SRR3591712Green floral bud155.933
SRR3591713Yellow flower100.928
SRP173429 SRR8316895Juvenile bud stage 86.797
SRR8316896Juvenile bud stage 95.849
SRR8316897Juvenile bud stage 45.721
SRR8316894Third green stage 35.323
SRR8316900Third green stage 124.567
SRR8316901Third green stage 121.054
SRR8316898Complete white stage 40.934
SRR8316899Complete white stage 147.070
SRR8316903Complete white stage 66.975
SRR8316902Silver flowering stage42.597
SRR8316904Silver flowering stage40.545
SRR8316905Silver flowering stage28.038
SRR8316906Gold flowering stage 92.796
SRR8316907Gold flowering stage 90.182
SRR8316908Gold flowering stage 91.383
SRP132670SRR6706286Control112.021
SRR6706287Light intensity 50%100.909
SRR6706288Light intensity 20%112.024
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1233.062
CNS0095593Slightly white alabastrum(diploid) 2208.832
CNS0095594Slightly white alabastrum(diploid) 3232.911
CNS0095595Whole white alabastrum(diploid) 2235.022
CNS0095596Whole white alabastrum(diploid) 3140.528
CNS0095597Whole white alabastrum(diploid) 4180.742
CNS0095598Silvery flower (diploied) 1125.869
CNS0095599Silvery flower (diploied) 2114.884
CNS0095600Silvery flower (diploied) 386.063
CNS0095601Golden flower (diploid) 1110.045
CNS0095602Golden flower (diploid) 293.051
CNS0095603Golden flower (diploid) 393.375
CNS0095604Slightly white alabastrum(tetraploid) 1113.118
CNS0095605Slightly white alabastrum(tetraploid) 2141.931
CNS0095606Slightly white alabastrum(tetraploid) 3154.969
CNS0095607Whole white alabastrum(tetraploid) 184.867
CNS0095608Whole white alabastrum(tetraploid) 275.905
CNS0095609Whole white alabastrum(tetraploid) 384.826
CNS0095610Silvery flower (tetraploid) 166.177
CNS0095611Silvery flower (tetraploid) 276.739
CNS0095612Silvery flower (tetraploid) 369.901
CNS0095613Golden flower (tetraploid) 189.128
CNS0095614Golden flower (tetraploid) 279.974
CNS0095615Golden flower (tetraploid) 362.682
CRA001975CRR073297Stem 1124.113
CRR073298Stem 2131.253
CRR073299Stem 3176.098
CRR073300Leaf 1121.469
CRR073301Leaf 2133.537
CRR073302Leaf 3171.246
CRR073303Juvenile bud 1145.423
CRR073304Juvenile bud 2158.274
CRR073305Juvenile bud 3154.862
CRR073306Third green 1100.229
CRR073307Third green 2114.663
CRR073308Third green 393.632
CRR073309Second white 1128.530
CRR073310Second white 295.833
CRR073311Second white 349.248
CRR073312Silver flowering 190.853
CRR073313Silver flowering 2134.215
CRR073314Silver flowering 3104.090
CRR073315Gold flowering 186.887
CRR073316Gold flowering 295.402
CRR073317Gold flowering 3132.249
CRR073318Tawny withering 1322.370
CRR073319Tawny withering 2431.705
CRR073320Tawny withering 3561.518