Gene detail

Detail information of GWHGAAZE001018

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006349076.1	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|M5WX86\|M5WX86_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18279.1}
TAIR10	AT5G22750.1	DNA/RNA helicase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	21940921	21957226	+
GWHAAZE00000001	mRNA	21940921	21957226	+
GWHAAZE00000001	exon	21940921	21941235	+
GWHAAZE00000001	exon	21941915	21942181	+
GWHAAZE00000001	exon	21942730	21942863	+
GWHAAZE00000001	exon	21942974	21943109	+
GWHAAZE00000001	exon	21943551	21943604	+
GWHAAZE00000001	exon	21943680	21943826	+
GWHAAZE00000001	exon	21943925	21944076	+
GWHAAZE00000001	exon	21944159	21944243	+
GWHAAZE00000001	exon	21944333	21944605	+
GWHAAZE00000001	exon	21944725	21944871	+
GWHAAZE00000001	exon	21945329	21945484	+
GWHAAZE00000001	exon	21947798	21947865	+
GWHAAZE00000001	exon	21948952	21949074	+
GWHAAZE00000001	exon	21949180	21949279	+
GWHAAZE00000001	exon	21949380	21949492	+
GWHAAZE00000001	exon	21951110	21951384	+
GWHAAZE00000001	exon	21951461	21951556	+
GWHAAZE00000001	exon	21951642	21951741	+
GWHAAZE00000001	exon	21952289	21952567	+
GWHAAZE00000001	exon	21954255	21954455	+
GWHAAZE00000001	exon	21955246	21955339	+
GWHAAZE00000001	exon	21955608	21955679	+
GWHAAZE00000001	exon	21955972	21956070	+
GWHAAZE00000001	exon	21957104	21957226	+
GWHAAZE00000001	CDS	21940921	21941235	+
GWHAAZE00000001	CDS	21941915	21942181	+
GWHAAZE00000001	CDS	21942730	21942863	+
GWHAAZE00000001	CDS	21942974	21943109	+
GWHAAZE00000001	CDS	21943551	21943604	+
GWHAAZE00000001	CDS	21943680	21943826	+
GWHAAZE00000001	CDS	21943925	21944076	+
GWHAAZE00000001	CDS	21944159	21944243	+
GWHAAZE00000001	CDS	21944333	21944605	+
GWHAAZE00000001	CDS	21944725	21944871	+
GWHAAZE00000001	CDS	21945329	21945484	+
GWHAAZE00000001	CDS	21947798	21947865	+
GWHAAZE00000001	CDS	21948952	21949074	+
GWHAAZE00000001	CDS	21949180	21949279	+
GWHAAZE00000001	CDS	21949380	21949492	+
GWHAAZE00000001	CDS	21951110	21951384	+
GWHAAZE00000001	CDS	21951461	21951556	+
GWHAAZE00000001	CDS	21951642	21951741	+
GWHAAZE00000001	CDS	21952289	21952567	+
GWHAAZE00000001	CDS	21954255	21954455	+
GWHAAZE00000001	CDS	21955246	21955339	+
GWHAAZE00000001	CDS	21955608	21955679	+
GWHAAZE00000001	CDS	21955972	21956070	+
GWHAAZE00000001	CDS	21957104	21957226	+

Transcript Sequence
>GWHTAAZE001020 ATGGGGAACAAAGTCACCGACGAACTAATAACGACTGTAAAGTCCATCGTCGGTCAAGAATATTCCGACATGGACGTAATCAGAGCTCTGCACATGGCCAACAACGACGCTACTGCCGCAATTAATATAATCTTCGATACACCGAGTTTTAAGAAAACTGAGATTCGTAGGAACAGGGACGCTTCGGACCGGAGTTCAAGTGCGAAAGTGGAAGCTAGGGTTGAGAATTCTAAGCGAAGCGGTAATGAGGCTTTGGATTCTGAGTTGAATGGGATTCACCAACAGCCTAGAATTAGGGGAGGGGCCAAGTGCCAGAGTAATGGTGGTGAGGAACATGGTGAATATTTGAGTGGGTGCTCGAGTTCAAATGGGAGTGAGTGGTGGTTTGTGGGTTGCGGTGAGGTTTCTGGGTTGTCGACGTGTAAAGGGAGGAGGCTGAAGATTGGTGAAGCAGTTGATTTCACATTTCCGTTGGAGAGAAAGTTGAGTTCGCCGTTGCTGGCCAAGTTTGGCAGTGGCCGAGGACGACAGGCTGCACCTTGTTCAGAGATTGTGAGGTTCTCTACTAAAGCTTGTGGGGAGATTGGGCGTATTCCGAATGAGTGGGCTAGGTGTATATTGCCGCTGGTGAGAGATAAGAAGATTCAAATTGAGGGTTGTTGCAAGTCTTCTCCTGATGTTTTGGGAGTTATGGACACCATTCTTTTGTCTATGAGAGTGTACATTAACAGTTCCATGTTCCGGAAAAGGCACCAAACCTCACTCAAGGCAGCTAGCAGTTCTGATGATGAATCAGTTGTGCACCCTCTTCCATCTCTGTTCCGGTTACTAGGACTGACCCCTTTTAAGAAGGCAGAATTCAGTCCTGGTGATTTGTATACAAGGAAACGGCCTTTAAACTCAAAGGACAGTTCTGGTGTCCCCCCTTCATCGTTACATGTCAACAAGTTTAAGAGCCCTTCTTTGAATGGAAGTGAGGTTGAAACTGAGGAGTCGATTTCAGATACGGATCTTGATAGCATCGTTGGTGTTGGGGATAGATCTGAGTTAGAGGAAATGGAGCCTGCTAGCACTCTTCAGTGTGAGCTTCGCCCTTACCAGAAACAGGCACTGTTCTGGATGATTCAACTGGAGAAAGGAAAAAGCATGGACGAGGCAGCAACAACTCTTCACCCATGCTGGGATGCATATCGCCTTGCAGACAAGAGGGAGTTTGTTGTATACTTGAATGCATTTTCTGGCGATGCTACAGTAGAGTTTCCTAGTACCCTTCAAATGGCCAGAGGAGGGATTTTGGCAGATGCTATGGGGCTTGGAAAGACTATCATGACCATATCCCTCCTCCTTGCTCATTCAGAAAGAGGCGGGTCATTAGGTAGCCAAATTACGAGTCAGGCCCTCAGTGAAAATAGTGAAACGTTTAATGTTTCAGATATGTCTCCAACCCCGGTAAAGAAAGTGGTGAAATTTCCTGGTTTTGATAAGCCTACGAAGCAACAAAACTCACTTATTGGTGGTGGGAACTTGATTATATGCCCAATGACTCTTTTAGGCCAGTGGAAGGTGGAGATTGAAAACCATGCACGGCCAGGGTCTTTGTCTATTTACGTCCATTATGGACAAAGTAGGCCAAAAGATGCAAAAGTTCTAGCTCAGAGCGATGTTGTACTTACTACATATGGAGTTTTAGCCTCGGAATTTTCAGCAGAGAATGCTGAAGAAAATGGGGGGCTTTACTCAGTAAGATGGTTCAGGGTAGTGTTAGATGAGGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTATCGCTGCTTCAGCTCTTATTGCTGATTGTCGATGGTGTCTTACTGGCACGCCCATACAGAACAAACTGGAGGATGTTTACAGTCTTCTTCGGTTTTTGAGGATTGAGCCATGGGGAAGCTGGGCATGGTGGAATAAACTCATTCAAAAACCTTTTGAGGAGGGTGATGAACGGGGATTAAAGTTGGTCCAATCCATCTTGAGATCAATCATGTTAAGGAGAACAAAGTCTAGCAGAGACCGAGAAGGCAGGCCAATTTTAGTTCTCCCACCAGCAGACATTCAGGTGATTTATTGTGAACTCACAGAAGCTGAAAAGGACTTTTATGAGGCTTTGTTCAAAAGATCCAAGGTGAAGTTCGATCAATTTGTTGAGCAAGGGCGGGTTCTTCACAACTATGCTTCTATTTTGGAGTTACTCTTACGTCTTCGCCAATGCTGTGATCATCCCTTTCTTGTGATGAGGAATATGATAGTGGTTGATGTTGGTGGTGGTACAGGGTTCACTACCTTGGGGATTGTGAAGCATGCTAATGCTAAGAATTTTACCATTCTTGATCAGTCCCCTCATCAGCTTGCTAAAGCTAAGGAGAAGGAGCCCTTGAAGGATTGTAAGATAATTGAAGGAGATGCTGAGGATCTTCCTTTTCCAACTGATTATCCGGATAGATATGTATCCGGGAGTATTGAGTATCGAGTACTGGCTGGACCCACAACGTGGGATCAAGGAAGCATACAGGATGTGTGGATGCTCTTCCCAACAGAGGAAGAGTACATTGAGTGGTTTACAAAGGCCAGATTTAAGGATGTTCAACTGAGAGGATTGGGCCAAAATGCTTGGTCCAAAGGTGGAGGATGTGGAAAAGCCTGTAAATCCATTTGTATTTGCTTTGTCGTTTCCTCCTGGGGGTTATGGCTGCCGCATACTATGTACTGTCGAGGTGATACTCAAGAATTCTCTGATCTGAATAGGCTTGCCAAACGCTTCCTTAAGGGCAGTCCAGACACAGACGAAGGTGAAGTAAAAAATATGCCTTCACGGGCTTTTATTCAGGAGGTTGTTGAAGAATTACGGAGTGGGGAACAAGGAGAATGCCCTATATGCCTTGAAGCCTTTGAAGATGCAGTTTTGACACCTTGTGCTCATCGCTTATGTCGAGAATGTCTATTGGCAAGTTGGAGAAGTCATACCTCTGGTCTTTGTCCTGTTTGCAGAAAAACAGTCAGCAGAAACGATCTTATTACAGCACCAACAGACAGCAGATTCCGAATTGATATTGAGAAAAATTGGGTGGAATCATCAAAAGTCTCGTTTCTATTGCGTGAACTAGAAAATCTCCGCTCAACGGGGTCTAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTAGACCTTTTGCAGATACCTCTTTCTAGGGGTAACATTCCGTTTCTTCGTCTAGATGGGACTCTAAACCAACAACAGCGCGAAAAAGTCATAAAGCAGTTTTCAGAAGAGAGTAACATCCTGGTGTTACTTATGTCATTGAAAGCTGGCGGAGTTGGAATAAACCTAACAGCAGCATCAAATGCCTTCGTCTTGGATCCATGGTGGAATCCGGCTGTAGAAGAACAAGCTGTCATGCGCATCCATCGGATTGGACAAACGAAAAGTGTAAATATTAAACGGTTTATTGTGAAGGGAACAGTGGAGGAAAGAATGGAGGCAGTACAAGCCCGCAAGCAGCGGTTGATATCGGGCGCTTTAACCGACCAAGAAGTCCGAACTGCTCGCGTTGAGGAACTTAAGATGCTTTTCACTTGA

Network for GWHGAAZE001018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08797.12	HIRAN	131	238	1.40E-14
PF00176.24	SNF2_N	366	755	2.50E-83
PF13649.7	Methyltransf_25	761	833	1.40E-08
PF13920.7	zf-C3HC4_3	964	1011	1.40E-09
PF00271.32	Helicase_C	1037	1149	1.30E-15

Protein Sequence

>GWHPAAZE001019
MGNKVTDELITTVKSIVGQEYSDMDVIRALHMANNDATAAINIIFDTPSFKKTEIRRNRDASDRSSSAKVEARVENSKRSGNEALDSELNGIHQQPRIRGGAKCQSNGGEEHGEYLSGCSSSNGSEWWFVGCGEVSGLSTCKGRRLKIGEAVDFTFPLERKLSSPLLAKFGSGRGRQAAPCSEIVRFSTKACGEIGRIPNEWARCILPLVRDKKIQIEGCCKSSPDVLGVMDTILLSMRVYINSSMFRKRHQTSLKAASSSDDESVVHPLPSLFRLLGLTPFKKAEFSPGDLYTRKRPLNSKDSSGVPPSSLHVNKFKSPSLNGSEVETEESISDTDLDSIVGVGDRSELEEMEPASTLQCELRPYQKQALFWMIQLEKGKSMDEAATTLHPCWDAYRLADKREFVVYLNAFSGDATVEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSERGGSLGSQITSQALSENSETFNVSDMSPTPVKKVVKFPGFDKPTKQQNSLIGGGNLIICPMTLLGQWKVEIENHARPGSLSIYVHYGQSRPKDAKVLAQSDVVLTTYGVLASEFSAENAEENGGLYSVRWFRVVLDEAHTIKSSKSQVSIAASALIADCRWCLTGTPIQNKLEDVYSLLRFLRIEPWGSWAWWNKLIQKPFEEGDERGLKLVQSILRSIMLRRTKSSRDREGRPILVLPPADIQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMRNMIVVDVGGGTGFTTLGIVKHANAKNFTILDQSPHQLAKAKEKEPLKDCKIIEGDAEDLPFPTDYPDRYVSGSIEYRVLAGPTTWDQGSIQDVWMLFPTEEEYIEWFTKARFKDVQLRGLGQNAWSKGGGCGKACKSICICFVVSSWGLWLPHTMYCRGDTQEFSDLNRLAKRFLKGSPDTDEGEVKNMPSRAFIQEVVEELRSGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRSHTSGLCPVCRKTVSRNDLITAPTDSRFRIDIEKNWVESSKVSFLLRELENLRSTGSKSIVFSQWTAFLDLLQIPLSRGNIPFLRLDGTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTAASNAFVLDPWWNPAVEEQAVMRIHRIGQTKSVNIKRFIVKGTVEERMEAVQARKQRLISGALTDQEVRTARVEELKMLFT

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0032259	biological_process	methylation
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding
GO:0016818	molecular_function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.613
	SRR3591706	second leaf	3.178
	SRR3591707	mature leaf	3.626
	SRR3591708	Shoot apex	6.940
	SRR3591709	Stem	3.350
	SRR3591710	White floral bud	4.446
	SRR3591711	White flower	5.264
	SRR3591712	Green floral bud	3.604
	SRR3591713	Yellow flower	4.211
SRP173429	SRR8316895	Juvenile bud stage	2.490
	SRR8316896	Juvenile bud stage	3.028
	SRR8316897	Juvenile bud stage	1.078
	SRR8316894	Third green stage	1.712
	SRR8316900	Third green stage	2.700
	SRR8316901	Third green stage	2.768
	SRR8316898	Complete white stage	0.643
	SRR8316899	Complete white stage	4.617
	SRR8316903	Complete white stage	2.114
	SRR8316902	Silver flowering stage	1.500
	SRR8316904	Silver flowering stage	2.303
	SRR8316905	Silver flowering stage	0.939
	SRR8316906	Gold flowering stage	3.072
	SRR8316907	Gold flowering stage	2.601
	SRR8316908	Gold flowering stage	3.353
SRP132670	SRR6706286	Control	2.942
	SRR6706287	Light intensity 50%	3.531
	SRR6706288	Light intensity 20%	3.280
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.189
	CNS0095593	Slightly white alabastrum(diploid) 2	1.656
	CNS0095594	Slightly white alabastrum(diploid) 3	2.130
	CNS0095595	Whole white alabastrum(diploid) 2	1.442
	CNS0095596	Whole white alabastrum(diploid) 3	1.074
	CNS0095597	Whole white alabastrum(diploid) 4	1.729
	CNS0095598	Silvery flower (diploied) 1	2.811
	CNS0095599	Silvery flower (diploied) 2	2.331
	CNS0095600	Silvery flower (diploied) 3	2.914
	CNS0095601	Golden flower (diploid) 1	1.895
	CNS0095602	Golden flower (diploid) 2	2.661
	CNS0095603	Golden flower (diploid) 3	2.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.579
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.407
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.503
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.202
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.895
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.006
	CNS0095610	Silvery flower (tetraploid) 1	2.848
	CNS0095611	Silvery flower (tetraploid) 2	2.546
	CNS0095612	Silvery flower (tetraploid) 3	3.114
	CNS0095613	Golden flower (tetraploid) 1	0.851
	CNS0095614	Golden flower (tetraploid) 2	1.738
	CNS0095615	Golden flower (tetraploid) 3	1.390
CRA001975	CRR073297	Stem 1	4.457
	CRR073298	Stem 2	3.042
	CRR073299	Stem 3	2.639
	CRR073300	Leaf 1	2.781
	CRR073301	Leaf 2	2.861
	CRR073302	Leaf 3	1.984
	CRR073303	Juvenile bud 1	1.645
	CRR073304	Juvenile bud 2	1.016
	CRR073305	Juvenile bud 3	2.154
	CRR073306	Third green 1	0.349
	CRR073307	Third green 2	0.308
	CRR073308	Third green 3	0.727
	CRR073309	Second white 1	0.622
	CRR073310	Second white 2	1.409
	CRR073311	Second white 3	0.953
	CRR073312	Silver flowering 1	1.141
	CRR073313	Silver flowering 2	1.133
	CRR073314	Silver flowering 3	1.230
	CRR073315	Gold flowering 1	1.600
	CRR073316	Gold flowering 2	2.321
	CRR073317	Gold flowering 3	1.680
	CRR073318	Tawny withering 1	2.113
	CRR073319	Tawny withering 2	2.022
	CRR073320	Tawny withering 3	2.255