Detail information of GWHGAAZE000994


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011009277.18.73167E-53PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Populus euphratica]
Swissprottr|Q9SJJ5|CKS2_ARATH1E-50Cyclin-dependent kinases regulatory subunit 2
trEMBLtr|A9PE37|A9PE37_POPTR1E-52Cyclin-dependent kinases regulatory subunit {ECO:0000256|RuleBase:RU311113}
TAIR10AT2G27960.14E-37cyclin-dependent kinase-subunit 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene2133953321341352-
GWHAAZE00000001mRNA2133953321341352-
GWHAAZE00000001exon2134111321341352-
GWHAAZE00000001exon2134094521341005-
GWHAAZE00000001exon2133953321339951-
GWHAAZE00000001five_prime_UTR2134116621341352-
GWHAAZE00000001CDS2134111321341165-
GWHAAZE00000001CDS2134094521341005-
GWHAAZE00000001CDS2133979921339951-
GWHAAZE00000001three_prime_UTR2133953321339798-
Transcript Sequence

Network for GWHGAAZE000994

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01111.20CKS4701.80E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02219CKS1 Cell cycle - yeast map04111

Gene Ontology

GO term OntologyName
GO:0016538molecular_functioncyclin-dependent protein serine/threonine kinase regulator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.885
SRR3591706second leaf19.457
SRR3591707mature leaf2.927
SRR3591708Shoot apex175.657
SRR3591709Stem48.098
SRR3591710White floral bud9.429
SRR3591711White flower9.838
SRR3591712Green floral bud15.144
SRR3591713Yellow flower15.007
SRP173429 SRR8316895Juvenile bud stage 29.112
SRR8316896Juvenile bud stage 30.218
SRR8316897Juvenile bud stage 16.103
SRR8316894Third green stage 8.062
SRR8316900Third green stage 15.607
SRR8316901Third green stage 10.967
SRR8316898Complete white stage 2.167
SRR8316899Complete white stage 10.697
SRR8316903Complete white stage 4.440
SRR8316902Silver flowering stage1.223
SRR8316904Silver flowering stage0.927
SRR8316905Silver flowering stage1.021
SRR8316906Gold flowering stage 2.282
SRR8316907Gold flowering stage 3.788
SRR8316908Gold flowering stage 2.985
SRP132670SRR6706286Control15.252
SRR6706287Light intensity 50%17.653
SRR6706288Light intensity 20%21.206
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.519
CNS0095593Slightly white alabastrum(diploid) 223.926
CNS0095594Slightly white alabastrum(diploid) 322.558
CNS0095595Whole white alabastrum(diploid) 219.102
CNS0095596Whole white alabastrum(diploid) 315.250
CNS0095597Whole white alabastrum(diploid) 410.903
CNS0095598Silvery flower (diploied) 113.481
CNS0095599Silvery flower (diploied) 213.315
CNS0095600Silvery flower (diploied) 36.160
CNS0095601Golden flower (diploid) 17.875
CNS0095602Golden flower (diploid) 27.339
CNS0095603Golden flower (diploid) 38.388
CNS0095604Slightly white alabastrum(tetraploid) 124.711
CNS0095605Slightly white alabastrum(tetraploid) 225.448
CNS0095606Slightly white alabastrum(tetraploid) 336.484
CNS0095607Whole white alabastrum(tetraploid) 123.720
CNS0095608Whole white alabastrum(tetraploid) 26.528
CNS0095609Whole white alabastrum(tetraploid) 37.504
CNS0095610Silvery flower (tetraploid) 12.173
CNS0095611Silvery flower (tetraploid) 23.743
CNS0095612Silvery flower (tetraploid) 32.607
CNS0095613Golden flower (tetraploid) 12.661
CNS0095614Golden flower (tetraploid) 22.410
CNS0095615Golden flower (tetraploid) 31.888
CRA001975CRR073297Stem 122.117
CRR073298Stem 221.325
CRR073299Stem 336.192
CRR073300Leaf 17.607
CRR073301Leaf 28.713
CRR073302Leaf 36.796
CRR073303Juvenile bud 16.274
CRR073304Juvenile bud 24.136
CRR073305Juvenile bud 34.211
CRR073306Third green 11.898
CRR073307Third green 22.487
CRR073308Third green 32.053
CRR073309Second white 12.268
CRR073310Second white 21.274
CRR073311Second white 32.611
CRR073312Silver flowering 11.230
CRR073313Silver flowering 23.014
CRR073314Silver flowering 32.658
CRR073315Gold flowering 10.284
CRR073316Gold flowering 21.499
CRR073317Gold flowering 31.214
CRR073318Tawny withering 169.891
CRR073319Tawny withering 263.131
CRR073320Tawny withering 377.794